Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_M01
(607 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13876-1|AAM48538.1| 353|Caenorhabditis elegans Hypothetical pr... 32 0.37
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 31 0.84
U88173-13|AAM15573.1| 1225|Caenorhabditis elegans Hypothetical p... 30 1.1
U53154-7|AAC25857.1| 356|Caenorhabditis elegans Nuclear hormone... 30 1.1
AF273783-1|AAG15132.1| 358|Caenorhabditis elegans nuclear recep... 30 1.1
Z71181-10|CAA94901.2| 678|Caenorhabditis elegans Hypothetical p... 30 1.5
Z71177-11|CAA94873.2| 678|Caenorhabditis elegans Hypothetical p... 30 1.5
U13876-2|AAM48539.1| 373|Caenorhabditis elegans Hypothetical pr... 30 1.5
AC006607-5|AAF60371.2| 640|Caenorhabditis elegans Hypothetical ... 29 1.9
Z81494-10|CAN86581.1| 1507|Caenorhabditis elegans Hypothetical p... 29 2.6
Z81494-9|CAB04052.2| 1505|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical p... 28 4.5
U41540-10|AAK39228.1| 372|Caenorhabditis elegans Hypothetical p... 28 4.5
AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like... 28 4.5
>U13876-1|AAM48538.1| 353|Caenorhabditis elegans Hypothetical
protein F57B9.7a protein.
Length = 353
Score = 31.9 bits (69), Expect = 0.37
Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 8/126 (6%)
Frame = +3
Query: 141 VDESKDALYHSASSDTAD--DVARELIYDTNIRHNDRYPEANDVDNLDNEIME---ALTL 305
V+E +A H + + D +++++ + N++ +VD L +E+ E +L L
Sbjct: 56 VEEDAEAYRHDTADKVIELQDRVQQVMFLYSQLDNEKSTLLYEVDLLKDELEEKDASLNL 115
Query: 306 ETGNLPDLTEEQSS---SIDESTRRDEFWSEQLSVENLNYLNRILCLDQEGVDGHSLESE 476
+ DLT E + +ID + +++S + LCL +E D ES
Sbjct: 116 SSRECRDLTSEVKALKRTIDALHASQQQLKQEISQRDQLIQENGLCLVEEDPDDEGSEST 175
Query: 477 WEASGE 494
ASGE
Sbjct: 176 NNASGE 181
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 30.7 bits (66), Expect = 0.84
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 8/47 (17%)
Frame = +3
Query: 105 IPKSHSTHNFN-HVDESKDALYHSASSDTAD-------DVARELIYD 221
IPK H + HVD+S+D+L S+S +T D DV E+ YD
Sbjct: 2295 IPKEHLQDSTGFHVDQSRDSLDSSSSCETTDGWLGDTFDVITEMAYD 2341
>U88173-13|AAM15573.1| 1225|Caenorhabditis elegans Hypothetical
protein F46F11.1b protein.
Length = 1225
Score = 30.3 bits (65), Expect = 1.1
Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 3/118 (2%)
Frame = +3
Query: 27 RPSLHQSLIVTDNAQTASNGDPPD-RYIPKSHSTHNFNHVDESKDALYHSASSDTADDVA 203
R S +S D+A +++ G P + + + + D L S+++++ +
Sbjct: 946 RSSGRESRDTNDSASSSTEGRRPSIEKVVTVVTPTQLSTPSVTNDDLSISSNAESTAAES 1005
Query: 204 RELIYDTNIRHNDRYPEANDVDNLDNEIMEAL--TLETGNLPDLTEEQSSSIDESTRR 371
L+ T HND + NDV++++ ++ L T + + IDE TRR
Sbjct: 1006 TGLVNTTTKTHNDSEDDLNDVESVNLVALDELNNTTKASQRGSFHVTEPIQIDEKTRR 1063
>U53154-7|AAC25857.1| 356|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 42 protein.
Length = 356
Score = 30.3 bits (65), Expect = 1.1
Identities = 30/113 (26%), Positives = 48/113 (42%)
Frame = +3
Query: 3 ECCKHDVRRPSLHQSLIVTDNAQTASNGDPPDRYIPKSHSTHNFNHVDESKDALYHSASS 182
+C K +R ++ L + S PD Y P ST + V E+ + YH
Sbjct: 69 KCLKVGMRESAVLSRLAKKNQNYKKSIVGSPDAYEP---STSTSDSVLENLQSAYHKLE- 124
Query: 183 DTADDVARELIYDTNIRHNDRYPEANDVDNLDNEIMEALTLETGNLPDLTEEQ 341
+T V I +T++ Y NDV D +++ LET D+++EQ
Sbjct: 125 ETRKRVFN--ISETHVSQCCNYKRMNDVFFEDIKLVMEHLLETFKKSDISQEQ 175
>AF273783-1|AAG15132.1| 358|Caenorhabditis elegans nuclear receptor
NHR-42 protein.
Length = 358
Score = 30.3 bits (65), Expect = 1.1
Identities = 30/113 (26%), Positives = 48/113 (42%)
Frame = +3
Query: 3 ECCKHDVRRPSLHQSLIVTDNAQTASNGDPPDRYIPKSHSTHNFNHVDESKDALYHSASS 182
+C K +R ++ L + S PD Y P ST + V E+ + YH
Sbjct: 71 KCLKVGMRESAVLSRLAKKNQNYKKSIVGSPDAYEP---STSTSDSVLENLQSAYHKLE- 126
Query: 183 DTADDVARELIYDTNIRHNDRYPEANDVDNLDNEIMEALTLETGNLPDLTEEQ 341
+T V I +T++ Y NDV D +++ LET D+++EQ
Sbjct: 127 ETRKRVFN--ISETHVSQCCNYKRMNDVFFEDIKLVMEHLLETFKKSDISQEQ 177
>Z71181-10|CAA94901.2| 678|Caenorhabditis elegans Hypothetical
protein K07C5.8 protein.
Length = 678
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 75 ASNGDPPDRYIPKSHSTHNFNHVDESKDALYHSASS 182
+SNGDP D Y P+ + H D YHS++S
Sbjct: 444 SSNGDPFDSYDPRVLTETLTGHTDAIWSVAYHSSNS 479
>Z71177-11|CAA94873.2| 678|Caenorhabditis elegans Hypothetical
protein K07C5.8 protein.
Length = 678
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 75 ASNGDPPDRYIPKSHSTHNFNHVDESKDALYHSASS 182
+SNGDP D Y P+ + H D YHS++S
Sbjct: 444 SSNGDPFDSYDPRVLTETLTGHTDAIWSVAYHSSNS 479
>U13876-2|AAM48539.1| 373|Caenorhabditis elegans Hypothetical
protein F57B9.7b protein.
Length = 373
Score = 29.9 bits (64), Expect = 1.5
Identities = 33/141 (23%), Positives = 58/141 (41%), Gaps = 8/141 (5%)
Frame = +3
Query: 96 DRYIPKSHSTHNFNHVDESKDALYHSASSDTAD--DVARELIYDTNIRHNDRYPEANDVD 269
+ Y + ST N N V + + D +++++ + N++ +VD
Sbjct: 61 EAYRHDTASTSNTNGVSSQSNQTQEQLHDKVIELQDRVQQVMFLYSQLDNEKSTLLYEVD 120
Query: 270 NLDNEIME---ALTLETGNLPDLTEEQSS---SIDESTRRDEFWSEQLSVENLNYLNRIL 431
L +E+ E +L L + DLT E + +ID + +++S + L
Sbjct: 121 LLKDELEEKDASLNLSSRECRDLTSEVKALKRTIDALHASQQQLKQEISQRDQLIQENGL 180
Query: 432 CLDQEGVDGHSLESEWEASGE 494
CL +E D ES ASGE
Sbjct: 181 CLVEEDPDDEGSESTNNASGE 201
>AC006607-5|AAF60371.2| 640|Caenorhabditis elegans Hypothetical
protein C09E7.4 protein.
Length = 640
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +3
Query: 291 EALTLETGNLPDLTEEQSSSIDESTRRDEFWSEQLSVENLNYL 419
EA T + G D ++ + ES RD F+SE+ EN N L
Sbjct: 34 EATTTKKGKFSDSYRKRKADEIESGIRDGFYSERPKCENFNVL 76
>Z81494-10|CAN86581.1| 1507|Caenorhabditis elegans Hypothetical
protein F02E9.4b protein.
Length = 1507
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 240 DRYPEANDVDNLDNEIMEALTLETGNLPDLTEEQSSSIDE 359
D+ E +DVD +D+E E +E N ++ EE + I+E
Sbjct: 418 DKSKEKDDVDGIDDEDDEESGIEDKNNEEMMEEDNHLIEE 457
>Z81494-9|CAB04052.2| 1505|Caenorhabditis elegans Hypothetical
protein F02E9.4a protein.
Length = 1505
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 240 DRYPEANDVDNLDNEIMEALTLETGNLPDLTEEQSSSIDE 359
D+ E +DVD +D+E E +E N ++ EE + I+E
Sbjct: 418 DKSKEKDDVDGIDDEDDEESGIEDKNNEEMMEEDNHLIEE 457
>Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical
protein F15B9.7 protein.
Length = 2577
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 154 KTRCITALVRTRPTTSPANSSTIRISGITIDIRKRTTSIIWTTK 285
K ITA++R + PA SST+ ++ IDI ++I K
Sbjct: 441 KNSPITAVIRAKDGAQPALSSTVPLTINVIDINDHAPTLIAAQK 484
>Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical
protein F15B9.7 protein.
Length = 2577
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 154 KTRCITALVRTRPTTSPANSSTIRISGITIDIRKRTTSIIWTTK 285
K ITA++R + PA SST+ ++ IDI ++I K
Sbjct: 441 KNSPITAVIRAKDGAQPALSSTVPLTINVIDINDHAPTLIAAQK 484
>U41540-10|AAK39228.1| 372|Caenorhabditis elegans Hypothetical
protein F35H12.1 protein.
Length = 372
Score = 28.3 bits (60), Expect = 4.5
Identities = 20/76 (26%), Positives = 33/76 (43%)
Frame = +3
Query: 57 TDNAQTASNGDPPDRYIPKSHSTHNFNHVDESKDALYHSASSDTADDVARELIYDTNIRH 236
T+N + + + D Y+ KS S NF + S D L + + + + R L + N R
Sbjct: 173 TENGEDSEDSDMEHMYVRKSKSVPNFKNA-TSPDVLDSRSLQELHEKLERNLTLNDNERC 231
Query: 237 NDRYPEANDVDNLDNE 284
EA+ V + E
Sbjct: 232 KMLKHEAHRVMKIAEE 247
>AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like
protein FMI-1 protein.
Length = 2596
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 154 KTRCITALVRTRPTTSPANSSTIRISGITIDIRKRTTSIIWTTK 285
K ITA++R + PA SST+ ++ IDI ++I K
Sbjct: 441 KNSPITAVIRAKDGAQPALSSTVPLTINVIDINDHAPTLIAAQK 484
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,014,012
Number of Sequences: 27780
Number of extensions: 251901
Number of successful extensions: 1069
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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