Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_M01
         (607 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    33   0.002
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    25   0.76 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    25   0.76 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   1.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.3  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   9.4  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 33.1 bits (72), Expect = 0.002
 Identities = 30/107 (28%), Positives = 42/107 (39%), Gaps = 1/107 (0%)
 Frame = +3

Query: 24  RRPSLHQSLIVTDNAQTASNGDP-PDRYIPKSHSTHNFNHVDESKDALYHSASSDTADDV 200
           RR S   S  + D    +S+  P P     + H  HN     + K    H  + DT    
Sbjct: 22  RRYSKRFSSSIVDRRSPSSSRSPSPSLLTSQPHQDHN-----KEKSKNNHHCNQDTEKLN 76

Query: 201 ARELIYDTNIRHNDRYPEANDVDNLDNEIMEALTLETGNLPDLTEEQ 341
             E+  D +   ND+  E   VD L N++ E    E  N+    EEQ
Sbjct: 77  QLEIESDNSKEVNDKKEENFIVDRLRNDLFECENKEKSNVCLKFEEQ 123


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +3

Query: 369 RDEFWSEQLSVENLNYLNRILCLDQEGVDGHSLESEW 479
           +D FW EQ S      ++ +LC+        SL   W
Sbjct: 318 QDSFWLEQYSWALFKAMSHMLCIGYGRFPPQSLTDMW 354


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +3

Query: 369 RDEFWSEQLSVENLNYLNRILCLDQEGVDGHSLESEW 479
           +D FW EQ S      ++ +LC+        SL   W
Sbjct: 286 QDSFWLEQYSWALFKAMSHMLCIGYGRFPPQSLTDMW 322


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/33 (30%), Positives = 22/33 (66%)
 Frame = -3

Query: 296 RFHDFVVQIIDVVRFRISIVMPDIRIVDEFAGD 198
           RF++ V ++ID ++  I  ++P++  V+E  G+
Sbjct: 557 RFYNVVYKLIDNIKKEIYDILPEVD-VEEILGE 588


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 597 SSTGPGPRTPPA*VQGRDKLESSST*VPSVGARNSRR 487
           S+TG GP TP A V   +   + +T   ++  R  R+
Sbjct: 232 SATGTGPATPSAVVATSNATAAMTTGTTTIPTRRLRK 268



 Score = 21.4 bits (43), Expect = 7.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 431 VFGPGGCRRA*FRIGMGSVRRELRAPTLGTQ 523
           V G GG RRA     + +  R++++  LGT+
Sbjct: 581 VVGAGGGRRAYTEEELQAALRDIQSGKLGTR 611


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +3

Query: 384 SEQLSVENLNYLNRILCL 437
           +E++ + NLN++  + CL
Sbjct: 272 TERMIIANLNFILHLFCL 289


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,564
Number of Sequences: 438
Number of extensions: 2918
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)