Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_M01
(607 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g09090.1 68416.m01069 defective in exine formation protein (D... 32 0.26
At4g03170.1 68417.m00433 hypothetical protein 32 0.34
At3g47390.1 68416.m05153 cytidine/deoxycytidylate deaminase fami... 30 1.0
At4g29950.2 68417.m04261 microtubule-associated protein identica... 29 1.8
At4g29950.1 68417.m04260 microtubule-associated protein identica... 29 1.8
At1g02000.1 68414.m00118 NAD-dependent epimerase/dehydratase fam... 29 1.8
At5g43930.1 68418.m05374 transducin family protein / WD-40 repea... 29 3.2
At4g38260.1 68417.m05404 expressed protein contains Pfam PF05742... 29 3.2
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID... 29 3.2
At1g10680.1 68414.m01214 P-glycoprotein, putative similar to P-g... 29 3.2
At3g10880.1 68416.m01310 hypothetical protein 28 4.2
At1g07530.1 68414.m00806 scarecrow-like transcription factor 14 ... 28 4.2
At5g44680.1 68418.m05474 methyladenine glycosylase family protei... 28 5.5
At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR... 28 5.5
At2g39470.1 68415.m04844 photosystem II reaction center PsbP fam... 27 7.3
At2g20290.1 68415.m02370 myosin, putative similar to myosin (GI:... 27 7.3
At5g01800.1 68418.m00099 saposin B domain-containing protein con... 27 9.6
At4g26440.1 68417.m03804 WRKY family transcription factor identi... 27 9.6
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 27 9.6
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 27 9.6
>At3g09090.1 68416.m01069 defective in exine formation protein
(DEX1) identical to defective in exine formation
[Arabidopsis thaliana] gi|11138669|gb|AAG31444; contains
Pfam domain PF01839: FG-GAP repeat
Length = 896
Score = 32.3 bits (70), Expect = 0.26
Identities = 33/150 (22%), Positives = 66/150 (44%)
Frame = +3
Query: 27 RPSLHQSLIVTDNAQTASNGDPPDRYIPKSHSTHNFNHVDESKDALYHSASSDTADDVAR 206
R +L++++ + Q+ +GD + I + ST N S + L S +S TA+ V +
Sbjct: 273 RENLNRNVTTNEVDQSKISGDKNETVIKLNTSTGN------SSETLGTSGNSSTAETVTK 326
Query: 207 ELIYDTNIRHNDRYPEANDVDNLDNEIMEALTLETGNLPDLTEEQSSSIDESTRRDEFWS 386
+ D E+ D + + E + + T E + S E R ++ +
Sbjct: 327 S---GRRLLEEDGSKESVDSHSDSKDNSEGVRMATVENDGGLEADADSSFELLRENDELA 383
Query: 387 EQLSVENLNYLNRILCLDQEGVDGHSLESE 476
++ S + +Y++ + D+E V+G SE
Sbjct: 384 DEYSYDYDDYVDEKMWGDEEWVEGQHENSE 413
>At4g03170.1 68417.m00433 hypothetical protein
Length = 250
Score = 31.9 bits (69), Expect = 0.34
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +3
Query: 240 DRYPEANDVDNLDNEIMEALTLETGNLPDLTEEQSSSIDESTRRDE 377
DR + +D D++D+E+++ E +LP L E Q++ R +E
Sbjct: 34 DREEDIDDEDDIDDEVIDDEDYEVASLPLLQESQANQKQSREREEE 79
>At3g47390.1 68416.m05153 cytidine/deoxycytidylate deaminase family
protein similar to riboflavin-specific deaminase
[Actinobacillus pleuropneumoniae] GI:1173516; contains
Pfam profile PF00383: Cytidine and deoxycytidylate
deaminase zinc-binding region
Length = 599
Score = 30.3 bits (65), Expect = 1.0
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 8/135 (5%)
Frame = +3
Query: 108 PKSHSTHNFNHVDESK--DALYHSASSDTADDVARELIYDTNIRHNDRYPEANDVDNLDN 281
PK+ + F V+ K D + ++ + ++ A LI + +R ND +++
Sbjct: 467 PKTLKANKFVGVENPKAYDCVEKIRTARSPEEAA--LIGRSTLRQKPELVR-NDWEDVKI 523
Query: 282 EIM-EALTLETGNLPDLTEEQSSSID----ESTRRDEFWSEQLSVENLNYLNRILC-LDQ 443
E+M +AL + P L S+I E++ D FW E LNYL R+L L
Sbjct: 524 EVMYKALKCKFSTYPHLKSMLLSTIGTVLVEASPHDLFWGGGREGEGLNYLGRLLMQLRS 583
Query: 444 EGVDGHSLESEWEAS 488
E + S+ +E +S
Sbjct: 584 EYLGESSVSAEKTSS 598
>At4g29950.2 68417.m04261 microtubule-associated protein identical
to microtubule-associated protein GI:5032258 from
[Arabidopsis thaliana]; similar to TBC1 domain family
member 5 (Swiss-Prot:Q92609) [Homo sapiens]; contains
Pfam profile PF00566: TBC domain
Length = 703
Score = 29.5 bits (63), Expect = 1.8
Identities = 21/74 (28%), Positives = 31/74 (41%)
Frame = +3
Query: 198 VARELIYDTNIRHNDRYPEANDVDNLDNEIMEALTLETGNLPDLTEEQSSSIDESTRRDE 377
VAR L+ D N + EAN +D ++NE E N T + S + E D
Sbjct: 414 VARNLLEDFNRQLVSEPVEANPIDVVNNEDSSIRETEDINTDFETAAEESIVMEENSSDL 473
Query: 378 FWSEQLSVENLNYL 419
F + + NY+
Sbjct: 474 FSDPNSPLRDSNYI 487
>At4g29950.1 68417.m04260 microtubule-associated protein identical
to microtubule-associated protein GI:5032258 from
[Arabidopsis thaliana]; similar to TBC1 domain family
member 5 (Swiss-Prot:Q92609) [Homo sapiens]; contains
Pfam profile PF00566: TBC domain
Length = 828
Score = 29.5 bits (63), Expect = 1.8
Identities = 21/74 (28%), Positives = 31/74 (41%)
Frame = +3
Query: 198 VARELIYDTNIRHNDRYPEANDVDNLDNEIMEALTLETGNLPDLTEEQSSSIDESTRRDE 377
VAR L+ D N + EAN +D ++NE E N T + S + E D
Sbjct: 539 VARNLLEDFNRQLVSEPVEANPIDVVNNEDSSIRETEDINTDFETAAEESIVMEENSSDL 598
Query: 378 FWSEQLSVENLNYL 419
F + + NY+
Sbjct: 599 FSDPNSPLRDSNYI 612
>At1g02000.1 68414.m00118 NAD-dependent epimerase/dehydratase family
protein similar to nucleotide sugar epimerase from
Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF
[Escherichia coli] GI:5739472, CAPI protein
{Staphylococcus aureus} SP|P39858; contains Pfam profile
PF01370 NAD dependent epimerase/dehydratase family
Length = 434
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = -1
Query: 196 SSAVSELAL*YNASLDSST*LKLCVEWLFGIYRSGGSPLLA 74
SSA E Y S D T LK V W G Y+ GG + A
Sbjct: 394 SSAQREFG--YKPSTDLQTGLKKFVRWYLGYYKQGGKKVAA 432
>At5g43930.1 68418.m05374 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to WD-repeat protein 5 (SP:Q9UGP9) [Homo
sapiens]
Length = 726
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 513 SVGARNSRRTLPIPILNYARRHPPGPNTVSGSDSSN 406
S+ A N RT P+ P GPN+V G+ SN
Sbjct: 292 SLAAENENRTSSPPLPLATSSGPSGPNSVPGNSPSN 327
>At4g38260.1 68417.m05404 expressed protein contains Pfam PF05742:
Protein of unknown function (DUF833)
Length = 275
Score = 28.7 bits (61), Expect = 3.2
Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 8/117 (6%)
Frame = +3
Query: 78 SNGDPPDRYIPKSHSTHNFNHVDESKDALYHSASSDTADDVARELIYDTN-IRHNDRY-- 248
S GD P RY+ S F + + +LY+ + A +++ +IY TN H D+
Sbjct: 79 SRGDLPLRYLQSEKSPAEFAEEIQDEISLYNGFNLVVAHVLSKSMIYITNRPPHGDKLVT 138
Query: 249 ---PEANDVD--NLDNEIMEALTLETGNLPDLTEEQSSSIDESTRRDEFWSEQLSVE 404
P + + NLD+ + L L G L E S T +E + + E
Sbjct: 139 QVSPGIHVLSNANLDSPWPKCLRLREGFQQLLAENGSGEFPVKTMVEEVMTNTVKDE 195
>At1g67120.1 68414.m07636 midasin-related similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q12019)
[Saccharomyces cerevisiae]; similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
sapiens]; contains Prosite PS00017: ATP/GTP-binding site
motif A (P-loop)
Length = 5336
Score = 28.7 bits (61), Expect = 3.2
Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 5/112 (4%)
Frame = +3
Query: 183 DTADDVARELIYDTNIRHNDRYPEAND---VDNLDNEIMEALTLETGNLPDLTEEQSSSI 353
+TAD+ D ND E +D DNL+ +I G PD+ EQ I
Sbjct: 4625 ETADEPEESNTSDKPEEGNDENVEQDDFDDTDNLEEKIQTKEEALGGLTPDVDNEQ---I 4681
Query: 354 DESTRRDEFWSEQLSVENLNYLNRILCLDQEGVD--GHSLESEWEASGENCE 503
D+ D+ +E++ E+ N DQ+ + + E E S EN E
Sbjct: 4682 DDDMEMDK--TEEVEKEDANQQEEPCSEDQKHPEEGENDQEETQEPSEENME 4731
>At1g10680.1 68414.m01214 P-glycoprotein, putative similar to
P-glycoprotein GI:4204793 from [Solanum tuberosum]
Length = 1227
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = -3
Query: 266 DVVRF-RISIVMPDIRIVDEFAGDVVGRVRTSAVIQRVFRFVDVIEVMRRMALRYISIRW 90
DVV F +++ V+P ++V G G+ ++I+R + D ++ +RY+ ++W
Sbjct: 375 DVVIFDKLNFVIPAGKVVALVGGSGSGKSTMISLIERFYEPTDGAVMLDGNDIRYLDLKW 434
Query: 89 V 87
+
Sbjct: 435 L 435
>At3g10880.1 68416.m01310 hypothetical protein
Length = 278
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +3
Query: 279 NEIMEALTLETGNLPDLTEEQSSSIDESTRRDEFWSEQLSVENLN-YLNRILCLDQEGVD 455
+++ME L+ L + + + +S R E S ++ +E + YLN++LCL++ +
Sbjct: 166 SKLMEMLSECKNEKSKLQTDNADDLLDSLRA-ELRSREIQIEQMEEYLNQVLCLNETEIK 224
Query: 456 GHS 464
S
Sbjct: 225 SES 227
>At1g07530.1 68414.m00806 scarecrow-like transcription factor 14
(SCL14) identical to GB:AAD24412 from [Arabidopsis
thaliana] (Plant J. 18 (1), 111-119 (1999))
Length = 769
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +3
Query: 78 SNGDPPDRYIPKSHSTHNFNHVDESKDALYHSASSDTAD 194
S+ DPP+ Y ++++ +N N+ + D L S+SSD AD
Sbjct: 45 SSLDPPEAYPSQNNNNNNINNKAVAGDLL--SSSSDDAD 81
>At5g44680.1 68418.m05474 methyladenine glycosylase family protein
similar to SP|P05100 DNA-3-methyladenine glycosylase I
(EC 3.2.2.20) (3-methyladenine-DNA glycosylase I,
constitutive) {Escherichia coli}; contains Pfam profile
PF03352: Methyladenine glycosylase
Length = 353
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -2
Query: 558 VQGRDKLESSST*VPSVGARNSRRTLPIPILNYARRHPPGPNTVS 424
+ GR L+ S VP++ RNS + P LN P P +S
Sbjct: 17 INGRPVLQPKSNQVPTLDRRNSLKKSPPKPLNPIASKIPSPRPIS 61
>At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1234
Score = 27.9 bits (59), Expect = 5.5
Identities = 21/77 (27%), Positives = 33/77 (42%)
Frame = +3
Query: 177 SSDTADDVARELIYDTNIRHNDRYPEANDVDNLDNEIMEALTLETGNLPDLTEEQSSSID 356
SSD DD++ E Y +D N++D + + T + GN D +EE D
Sbjct: 1111 SSDDDDDLSSETDYSDECEDSDDSDLGNEID-YSEDYEDRDTSDLGNETDYSEEYEDH-D 1168
Query: 357 ESTRRDEFWSEQLSVEN 407
S +E+ + EN
Sbjct: 1169 SSDLGNEYDYNEECEEN 1185
>At2g39470.1 68415.m04844 photosystem II reaction center PsbP family
protein
Length = 238
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -1
Query: 520 STKCRCSQFSPDASHSDSKLCPS 452
S RC FSP SH LCP+
Sbjct: 5 SLSIRCGGFSPTISHKTEILCPN 27
>At2g20290.1 68415.m02370 myosin, putative similar to myosin
(GI:499047) [Arabidopsis thaliana]
Length = 1493
Score = 27.5 bits (58), Expect = 7.3
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +3
Query: 249 PEANDVDNLDNEIMEALTLETGNLPDLTEEQSSSIDESTRRDEFWSEQLSVENL 410
P +V +D +ME LT E L L IDE+ ++ E ++++S E L
Sbjct: 964 PVVKEVPVVDTVLMEKLTSENEKLKSLVTSLELKIDETEKKFE-ETKKISEERL 1016
>At5g01800.1 68418.m00099 saposin B domain-containing protein
contains Pfam profiles: PF00026 eukaryotic aspartyl
protease, PF03489 surfactant protein B, PF05184
saposin-like type B, region 1
Length = 217
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 261 DVDNLDNEIMEALTLETGNLPDLTEEQSSSIDESTR 368
D DN NE++EAL + +P L ++ S +D T+
Sbjct: 55 DYDN-QNELVEALHISCSQIPPLKKQCLSMVDHYTQ 89
>At4g26440.1 68417.m03804 WRKY family transcription factor identical
to WRKY transcription factor 34 (WRKY34) GI:15990591
from [Arabidopsis thaliana]
Length = 568
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +3
Query: 117 HSTHNFNHVDESKDALYHSAS-SDTADDVARELIYDTNIRHND 242
+ TH F + D + DALY + D ++ L YD + ++
Sbjct: 293 NGTHQFGYGDAAADALYRDENEDDRTSHMSVSLTYDGEVEESE 335
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -2
Query: 276 PDYRRRSLPDIDRYAG 229
PDY RR P+ DRY G
Sbjct: 168 PDYTRRRSPEYDRYKG 183
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -2
Query: 276 PDYRRRSLPDIDRYAG 229
PDY RR P+ DRY G
Sbjct: 194 PDYTRRRSPEYDRYKG 209
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,317,113
Number of Sequences: 28952
Number of extensions: 237395
Number of successful extensions: 936
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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