Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_L24
(563 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 271 4e-74
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 184 6e-48
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 149 2e-37
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 142 4e-35
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 132 3e-32
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 103 2e-23
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 99 5e-22
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 95 5e-21
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 95 6e-21
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 92 4e-20
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 92 6e-20
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 87 2e-18
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 86 4e-18
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 83 4e-17
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 81 1e-16
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 81 1e-16
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 75 7e-15
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 75 1e-14
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 72 5e-14
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 71 1e-13
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 69 4e-13
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 61 1e-10
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 56 5e-09
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 35 0.009
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar... 27 1.4
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S... 26 3.3
SPAC7D4.05 |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual 26 4.4
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 25 5.8
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 25 5.8
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 271 bits (665), Expect = 4e-74
Identities = 127/182 (69%), Positives = 149/182 (81%)
Frame = +1
Query: 1 YILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPK 180
Y LPAIVHIN QP + GDGPI LVLAPTRELA QIQQ ++FG SS +RNTCV+GG P+
Sbjct: 176 YCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPR 235
Query: 181 REQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIID 360
Q RDL RGVEI IATPGRL+D L+ TNL+R TYLVLDEADRMLDMGFEPQIRKI+D
Sbjct: 236 GPQIRDLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVD 295
Query: 361 QIRPDRQTLMWSATWPKEVRKLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKEN 540
QIRPDRQT+M+SATWPKEV++LA DYL DY+Q+ +GSL L+A+HNI QIV+V +K
Sbjct: 296 QIRPDRQTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRA 355
Query: 541 KL 546
+L
Sbjct: 356 RL 357
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 184 bits (449), Expect = 6e-48
Identities = 92/189 (48%), Positives = 127/189 (67%), Gaps = 3/189 (1%)
Frame = +1
Query: 1 YILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPK 180
++LP HI +Q P++ G+GPIA+++ PTRELA QI + F +R C +GGAP
Sbjct: 472 FLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPI 531
Query: 181 REQARDLERGVEIVIATPGRLIDFLEKG---TTNLQRCTYLVLDEADRMLDMGFEPQIRK 351
++Q DL+RG EIV+ TPGR+ID L TNL RCTYLVLDEADRM D+GFEPQ+ +
Sbjct: 532 KDQIADLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMR 591
Query: 352 IIDQIRPDRQTLMWSATWPKEVRKLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHE 531
II+ IRPDRQT+++SAT+P+ + LA L V+I +G + A+ + QIV+V E
Sbjct: 592 IINNIRPDRQTVLFSATFPRAMEALARKVLKKPVEITVGGRSVVAS-EVEQIVEVRPEES 650
Query: 532 KENKLNVLL 558
K ++L LL
Sbjct: 651 KFSRLLELL 659
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 149 bits (362), Expect = 2e-37
Identities = 77/166 (46%), Positives = 113/166 (68%), Gaps = 4/166 (2%)
Frame = +1
Query: 61 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 240
P L+LAPTREL QI + + +F S+VR V+GGA R Q R +++G +++ ATPGR
Sbjct: 256 PTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGR 315
Query: 241 LIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIR----PDRQTLMWSATWP 408
L+D +++G +L +LVLDEADRMLDMGFEPQIR I++ +RQTLM+SAT+P
Sbjct: 316 LVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQTLMFSATFP 375
Query: 409 KEVRKLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKL 546
++++ LA D+L DYV +++G + S + NI Q V ++ EK + L
Sbjct: 376 RDIQLLARDFLKDYVFLSVGRVG-STSENITQKVVHVEDSEKRSYL 420
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 142 bits (343), Expect = 4e-35
Identities = 83/192 (43%), Positives = 117/192 (60%), Gaps = 7/192 (3%)
Frame = +1
Query: 7 LPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKRE 186
+PA+ ++N + P LV++PTRELA Q + + + ++ V+GGAPK E
Sbjct: 221 IPALQYLNGLSDNK--SVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSE 278
Query: 187 QARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQI 366
QAR + ++I TPGRL+D + G+ + + YLVLDEADRMLD GFE IR II
Sbjct: 279 QAR-AAKNASVIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISH- 336
Query: 367 RPD------RQTLMWSATWPKEVRKLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQE- 525
PD RQT+ +SATWP+ VR LA +L D V+I IGS +L+A+ NI QIV++ +
Sbjct: 337 TPDPTRNGSRQTVFFSATWPESVRALAATFLKDPVKITIGSDELAASQNITQIVEILDDP 396
Query: 526 HEKENKLNVLLQ 561
KE L+ LL+
Sbjct: 397 RSKERMLDNLLR 408
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 132 bits (319), Expect = 3e-32
Identities = 78/209 (37%), Positives = 117/209 (55%), Gaps = 22/209 (10%)
Frame = +1
Query: 1 YILPAIVHINNQPPIRRGD---GPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGG 171
+I+P I+ I+ PP+ + GP A+VLAPTRELAQQIQ ++F R V GG
Sbjct: 303 FIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGG 362
Query: 172 APKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRK 351
EQ+ + +G IV+ATPGRL+D LE+ L +CTY+V+DEADRMLDMGFE + K
Sbjct: 363 HAFEEQSFQMSQGAHIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNK 422
Query: 352 IIDQIRPD-------------------RQTLMWSATWPKEVRKLAEDYLGDYVQINIGSL 474
I+ + RQT+M+SAT P V LA+ YL + V + IG++
Sbjct: 423 ILSSLPSSNASEKDGSILATANSSSSRRQTIMFSATLPPRVANLAKSYLIEPVMLTIGNI 482
Query: 475 QLSANHNILQIVDVCQEHEKENKLNVLLQ 561
+ + ++ + + +K ++ +L+
Sbjct: 483 GQAVDRVEQRVEMISDDSKKWRRVEEILE 511
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 103 bits (246), Expect = 2e-23
Identities = 66/160 (41%), Positives = 91/160 (56%), Gaps = 3/160 (1%)
Frame = +1
Query: 1 YILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAP 177
+ LP I + NN P A+VLAPTRELA QI + G S VR+ + GG
Sbjct: 100 FALPVIQELWNNPSPF------FAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMD 153
Query: 178 KREQARDLERGVEIVIATPGRLIDFLE--KGTTNLQRCTYLVLDEADRMLDMGFEPQIRK 351
QA L + +++ TPGRL+D LE KG + L+ YL++DEADR+LDM F P I K
Sbjct: 154 MVTQAVALSKKPHVLVCTPGRLMDHLENTKGFS-LKNLKYLIMDEADRLLDMDFGPIIDK 212
Query: 352 IIDQIRPDRQTLMWSATWPKEVRKLAEDYLGDYVQINIGS 471
I+ I +R+TL++SAT +V KL L V++ + S
Sbjct: 213 ILKIIPHERRTLLFSATMTSKVEKLQRASLHQPVRVAVSS 252
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 98.7 bits (235), Expect = 5e-22
Identities = 52/139 (37%), Positives = 78/139 (56%)
Frame = +1
Query: 67 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 246
AL+LAPTRELAQQIQ+V G+ V GG R+ L+ GV +V+ TPGR+
Sbjct: 90 ALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQAGVHVVVGTPGRVH 149
Query: 247 DFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKL 426
D +++ VLDEAD ML GF+ QI I + P Q ++ SAT P++V ++
Sbjct: 150 DMIQRRALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLLPPTAQVVLLSATMPQDVLEV 209
Query: 427 AEDYLGDYVQINIGSLQLS 483
++ D ++I + +L+
Sbjct: 210 TTKFMRDPIRILVKKDELT 228
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 95.5 bits (227), Expect = 5e-21
Identities = 54/162 (33%), Positives = 80/162 (49%)
Frame = +1
Query: 70 LVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 249
L+L PTRELA Q QV G V+ GG R+ L V IV+ TPGR++D
Sbjct: 116 LILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLD 175
Query: 250 FLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLA 429
KG + CT V+DEAD++L F P I +++ +RQ ++SAT+P V+
Sbjct: 176 LAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLSYFPKNRQISLYSATFPLIVKNFM 235
Query: 430 EDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVL 555
+ +L +IN+ + + Q E +K + LN L
Sbjct: 236 DKHLNKPYEINL--MDELTLRGVTQYYAFVDESQKVHCLNTL 275
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 95.1 bits (226), Expect = 6e-21
Identities = 52/155 (33%), Positives = 83/155 (53%)
Frame = +1
Query: 1 YILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPK 180
+++P I H+ + AL+L+P RELA Q +V +F + +R+ + GG
Sbjct: 123 FVIPMIEHLKST---LANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSL 179
Query: 181 REQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIID 360
EQ L +IV+ATPGR + + L Y+V DEADR+ +MGF Q+ +I+
Sbjct: 180 EEQFSLLSGKPDIVVATPGRFLHLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILH 239
Query: 361 QIRPDRQTLMWSATWPKEVRKLAEDYLGDYVQINI 465
+ RQTL++SAT P+ + A+ L D V + +
Sbjct: 240 ALPTSRQTLLFSATLPRTLVDFAKAGLQDPVLVRL 274
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 92.3 bits (219), Expect = 4e-20
Identities = 59/132 (44%), Positives = 85/132 (64%), Gaps = 4/132 (3%)
Frame = +1
Query: 46 RRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVI 225
R G G I +++PTRELA QI VA E + V GGA +R +A L +GV +++
Sbjct: 159 RNGTGVI--IISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKLVKGVNLLV 216
Query: 226 ATPGRLIDFLE--KGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRP--DRQTLMW 393
ATPGRL+D L+ KG + LV+DEADR+L++GFE ++R+I+ +I P +RQTL++
Sbjct: 217 ATPGRLLDHLQNTKGFV-FRNLRSLVIDEADRILEIGFEDEMRQIM-KILPSENRQTLLF 274
Query: 394 SATWPKEVRKLA 429
SAT +V LA
Sbjct: 275 SATQTTKVEDLA 286
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 91.9 bits (218), Expect = 6e-20
Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 19/168 (11%)
Frame = +1
Query: 1 YILPAIVHINNQPPI--RRGDGPIALVLAPTRELAQQIQQVASEFGN---SSYVRNTCVF 165
Y+LP + + P R G A+++APTREL QQI VA++ N S ++ + V
Sbjct: 195 YLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVI 254
Query: 166 GGAPKREQARDLERGVEIVIATPGRLIDFLEK-GTTNLQRCTYLVLDEADRMLDMGFEPQ 342
GG K+ + + +GV I+I TPGRL D LE ++ + ++VLDE DR++DMGFE
Sbjct: 255 GGEKKKSEKARIRKGVNILIGTPGRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFEET 314
Query: 343 IRKIIDQIR------------PDRQ-TLMWSATWPKEVRKLAEDYLGD 447
+ KI+ + P R+ T++ SAT V++L++ L D
Sbjct: 315 LTKILSYLESQSSIIKKDLSIPSRKVTMLCSATMKDTVKRLSDSALKD 362
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 87.0 bits (206), Expect = 2e-18
Identities = 46/131 (35%), Positives = 71/131 (54%)
Frame = +1
Query: 67 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 246
AL+L+PTRELA QIQ V G+ V+ GG + L+ G +V TPGR+
Sbjct: 92 ALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYGQHVVSGTPGRVT 151
Query: 247 DFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKL 426
D + + + L+LDEAD +L+ GF+ QI I + P Q ++ SAT P++V ++
Sbjct: 152 DMIRRRNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPPGTQVVVVSATLPQDVLEM 211
Query: 427 AEDYLGDYVQI 459
+ + V+I
Sbjct: 212 TNKFTTNPVRI 222
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 85.8 bits (203), Expect = 4e-18
Identities = 51/155 (32%), Positives = 83/155 (53%), Gaps = 1/155 (0%)
Frame = +1
Query: 70 LVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 249
L+L PTRELA Q VA++ + + + GG + Q ++L + +IVIATPGR ID
Sbjct: 334 LILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIATPGRFID 393
Query: 250 FLEKGT-TNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKL 426
+ ++ +V+DEADRML+ GF ++ +II RQT+++SAT +V L
Sbjct: 394 HMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKSRQTMLFSATMTDKVDDL 453
Query: 427 AEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHE 531
L V++ + + + +A + V V + E
Sbjct: 454 IRLSLNRPVRVFVDNKKTTAKLLTQEFVRVRPQRE 488
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 82.6 bits (195), Expect = 4e-17
Identities = 47/126 (37%), Positives = 71/126 (56%), Gaps = 1/126 (0%)
Frame = +1
Query: 55 DGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATP 234
DG ALV++PTRELA Q + + G + GG +E+ L R + I++ TP
Sbjct: 110 DGLGALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLSR-MNILVCTP 168
Query: 235 GRLIDFLEKGTT-NLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPK 411
GRL+ +++ + L+LDEADR+LDMGF + I+ + RQT+++SAT K
Sbjct: 169 GRLLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVHRQTMLFSATQTK 228
Query: 412 EVRKLA 429
V+ LA
Sbjct: 229 SVKDLA 234
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 81.0 bits (191), Expect = 1e-16
Identities = 57/168 (33%), Positives = 92/168 (54%), Gaps = 1/168 (0%)
Frame = +1
Query: 61 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 240
P A+ LAP+RELA+QI V +E G + V+ FG K + + +IVI TPG
Sbjct: 185 PQAICLAPSRELARQIMDVVTEMGKYTEVKTA--FG--IKDSVPKGAKIDAQIVIGTPGT 240
Query: 241 LIDFLEKGTTNLQRCTYLVLDEADRMLD-MGFEPQIRKIIDQIRPDRQTLMWSATWPKEV 417
++D +++ + + VLDEAD MLD G Q +I + + Q +++SAT+ + V
Sbjct: 241 VMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERV 300
Query: 418 RKLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQ 561
K AE + + +I + + +LS I Q+ CQ +E+K NVL++
Sbjct: 301 EKYAERFAPNANEIRLKTEELSV-EGIKQLYMDCQ--SEEHKYNVLVE 345
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 80.6 bits (190), Expect = 1e-16
Identities = 47/129 (36%), Positives = 72/129 (55%), Gaps = 6/129 (4%)
Frame = +1
Query: 58 GPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 237
G AL+L PTRELA QI + + G + +++ + GG Q+ DL + +V+ATPG
Sbjct: 75 GIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATPG 134
Query: 238 RLIDFL----EKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQI--RPDRQTLMWSA 399
RL D + E+ L+R +LV+DEADR+L F + + DRQTL+++A
Sbjct: 135 RLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVLPASEDRQTLLFTA 194
Query: 400 TWPKEVRKL 426
T +R+L
Sbjct: 195 TVTDAIRQL 203
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 74.9 bits (176), Expect = 7e-15
Identities = 53/188 (28%), Positives = 91/188 (48%), Gaps = 6/188 (3%)
Frame = +1
Query: 13 AIVHINNQPPIRRGDGPIA-LVLAPTRELAQQIQQVASEFGNS-SYVRNTCVFGGAPKR- 183
A+ ++ I DG ++ LVL TRELA QI+ + F VR +GG +
Sbjct: 103 AVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQ 162
Query: 184 --EQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD-MGFEPQIRKI 354
E +D + IV+ATPGRL + + + + VLDE D++L+ + I+++
Sbjct: 163 DMEAFKDKSKSPHIVVATPGRLNALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEV 222
Query: 355 IDQIRPDRQTLMWSATWPKEVRKLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEK 534
P +Q +M+SAT E+R + + ++ + ++I + H + Q +E K
Sbjct: 223 FRATPPQKQVMMFSATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHYVKLEEKAK 282
Query: 535 ENKLNVLL 558
K+N LL
Sbjct: 283 NRKINDLL 290
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 74.5 bits (175), Expect = 1e-14
Identities = 49/136 (36%), Positives = 74/136 (54%), Gaps = 4/136 (2%)
Frame = +1
Query: 67 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERG-VEIVIATPGRL 243
+++L+PTRELA QI + A + + +R + GG K + + RG ++IATPGRL
Sbjct: 115 SVILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRL 174
Query: 244 IDFLEKGTTNLQRCT-YLVLDEADRMLDMGFEPQIRKIIDQIRPDR-QTLMWSATWPKEV 417
D L+ T +LDEADR++DMGF I I + + + + L +SAT P +V
Sbjct: 175 EDHLQNPRILESLSTDSFILDEADRLMDMGFAESILNIHEAVTTTKTRKLCFSATMPPKV 234
Query: 418 RKLAEDYLG-DYVQIN 462
+ LG D+ IN
Sbjct: 235 SNVFRGILGTDFKLIN 250
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 72.1 bits (169), Expect = 5e-14
Identities = 45/125 (36%), Positives = 71/125 (56%), Gaps = 6/125 (4%)
Frame = +1
Query: 67 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 246
ALV+APTRELA QI Q S +R + GG ++Q R L + +V+ATPGRL
Sbjct: 195 ALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRLW 254
Query: 247 DFLEKG--TTNLQRCTYLVLDEADRMLDMGFEPQIRKIID----QIRPDRQTLMWSATWP 408
+ + T N ++ LVLDEADR+L ++ K+++ + RQT ++SAT+
Sbjct: 255 SVINENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQRQTFIFSATFD 314
Query: 409 KEVRK 423
+ +++
Sbjct: 315 EGLQQ 319
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 70.9 bits (166), Expect = 1e-13
Identities = 50/144 (34%), Positives = 74/144 (51%), Gaps = 10/144 (6%)
Frame = +1
Query: 1 YILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEF---------GNSSYVRN 153
Y+LP + + G G AL++APTRELA QI V E G V +
Sbjct: 55 YLLPCFDKVTRRDTDETGLG--ALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVAD 112
Query: 154 TCVFG-GAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMG 330
+ G G + A E+ +VI TPGRL + L ++ + L+LDEAD ++DMG
Sbjct: 113 MYIGGKGTLTNDLASFREKNPSVVIGTPGRLNEMLSHISS--KHLEILILDEADTLIDMG 170
Query: 331 FEPQIRKIIDQIRPDRQTLMWSAT 402
F+ ++ II Q+ R+T ++SAT
Sbjct: 171 FQRTLQSIISQLPKQRRTGLFSAT 194
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 69.3 bits (162), Expect = 4e-13
Identities = 54/190 (28%), Positives = 88/190 (46%), Gaps = 3/190 (1%)
Frame = +1
Query: 1 YILPAIVHINNQPPIRRGD-GPIALVLAPTRELAQQIQQVASEFGN--SSYVRNTCVFGG 171
Y++P + + Q I G AL+L PTRELAQQ+ V + S ++R V
Sbjct: 68 YLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATN 127
Query: 172 APKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRK 351
+ Q L +IVIATP R + + G L + +LV+DEAD ML G+ ++
Sbjct: 128 SSDTVQRPLLLDLPDIVIATPSRCVVHVASGVLPLDKLKFLVIDEADLMLSFGYNEDMKT 187
Query: 352 IIDQIRPDRQTLMWSATWPKEVRKLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHE 531
+ + Q+ + SAT K + L + + + + + A+ + Q V C E +
Sbjct: 188 LSRSLPRGTQSFLMSATLSKNIASLQKLVCRNPFILAVKDKE--ASGKLTQYVVKCSEQD 245
Query: 532 KENKLNVLLQ 561
K +LL+
Sbjct: 246 KFLLAYILLK 255
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 60.9 bits (141), Expect = 1e-10
Identities = 40/136 (29%), Positives = 72/136 (52%), Gaps = 2/136 (1%)
Frame = +1
Query: 67 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPK-REQARDLERGVEIVIATPGRL 243
A+++APTREL +QI + A + + ++ + K +E+A L ++ I TP RL
Sbjct: 118 AIIVAPTRELCEQIYRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKYDMCIGTPMRL 177
Query: 244 IDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDR-QTLMWSATWPKEVR 420
+ ++ G + ++ + V+DEADR+ + GF Q I+ ++SAT P V
Sbjct: 178 VQAIQTGLS-FEKVEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKSLFSATIPSRVE 236
Query: 421 KLAEDYLGDYVQINIG 468
+LA+ D ++I +G
Sbjct: 237 ELAKVVTVDPIRIIVG 252
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 55.6 bits (128), Expect = 5e-09
Identities = 30/105 (28%), Positives = 58/105 (55%), Gaps = 6/105 (5%)
Frame = +1
Query: 70 LVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDL-----ERGVEIVIATP 234
+V+ PTREL Q+ + + + + ++ G R + L E ++++++TP
Sbjct: 209 VVIVPTRELTVQVAKTFEYYMSGAGLQVCAWTGQKSLRHETYQLNGDENECRIDVLVSTP 268
Query: 235 GRLIDFLEKGTT-NLQRCTYLVLDEADRMLDMGFEPQIRKIIDQI 366
GRL+D + + +LQ Y+V+DEADR+LD F+ + ++ +I
Sbjct: 269 GRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDTVMMEI 313
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 34.7 bits (76), Expect = 0.009
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Frame = +1
Query: 193 RDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE-PQIRKIIDQIR 369
R L++G+E VI TP RL+ ++ + NLQR +++ + M M + P + I ++
Sbjct: 135 RCLKKGLECVIETPPRLLMNKDEISLNLQRLSHMETILSKLMPSMSLDLPSLEAKIAELS 194
Query: 370 PDRQTLMWSATWPKEVRKLAEDYLGDYVQINIGSLQ 477
Q T+P +V L + LG Y Q+ + Q
Sbjct: 195 ESLQ------TYPDKV--LTDIELGSYQQVTLNETQ 222
>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 27.5 bits (58), Expect = 1.4
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Frame = +1
Query: 118 ASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR-LIDFL---EKGTTNLQRC 285
A +FG+ S + C G KR RD+ G + ++ PG +D L K +L
Sbjct: 215 APKFGDRSCYQLPCNARGLAKRAILRDVREGADGIMVKPGTPYLDILAMASKLADDLPIA 274
Query: 286 TYLVLDE 306
TY V E
Sbjct: 275 TYQVSGE 281
>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1206
Score = 26.2 bits (55), Expect = 3.3
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +1
Query: 133 NSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRC 285
NS+YV+++C + K+ Q EIVIAT RL+ + T C
Sbjct: 16 NSNYVQSSCAASLSGKKAQ--------EIVIATESRLLIYKVDATDGRMNC 58
>SPAC7D4.05 |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 25.8 bits (54), Expect = 4.4
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +1
Query: 322 DMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLGD 447
D+GFE R+I D L+ P+E L +D + D
Sbjct: 157 DVGFEKPSREIFDYAMEKAVKLLGQEIQPEECMHLGDDLIKD 198
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 25.4 bits (53), Expect = 5.8
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +1
Query: 61 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLE 204
PI ++ +P E+ ++V + Y+ TC+ P+ E + DLE
Sbjct: 93 PIDIIFSPGEEVF--FERVGGDI--PVYLSGTCIITNIPEEEDSSDLE 136
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 25.4 bits (53), Expect = 5.8
Identities = 17/80 (21%), Positives = 34/80 (42%)
Frame = +1
Query: 76 LAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFL 255
+APT+ L Q + + + + G P + + + TP +++ +
Sbjct: 122 MAPTKPLVTQQMEACYKITGIPKSQTAELSGHVPVTTR-NQYYQSRNVFFVTPQTILNDI 180
Query: 256 EKGTTNLQRCTYLVLDEADR 315
+ G + R + LV+DEA R
Sbjct: 181 KHGICDRTRISCLVIDEAHR 200
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,416,898
Number of Sequences: 5004
Number of extensions: 49248
Number of successful extensions: 183
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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