Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_L24
(563 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 261 3e-70
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 248 2e-66
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 248 2e-66
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 206 1e-53
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 200 4e-52
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 200 4e-52
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 200 4e-52
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 198 2e-51
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 189 1e-48
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 182 1e-46
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 180 8e-46
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 161 3e-40
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 161 4e-40
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 159 1e-39
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 155 3e-38
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 155 3e-38
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 138 3e-33
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 132 1e-31
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 129 1e-30
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 124 5e-29
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 122 2e-28
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 120 7e-28
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 103 8e-23
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 103 8e-23
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 102 2e-22
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 101 3e-22
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 101 3e-22
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 101 3e-22
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 100 8e-22
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 100 8e-22
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 100 8e-22
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 99 2e-21
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 98 3e-21
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 97 7e-21
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 94 7e-20
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 93 2e-19
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 92 2e-19
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 91 6e-19
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 90 8e-19
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 89 1e-18
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 89 2e-18
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 89 3e-18
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 88 4e-18
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 88 4e-18
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 87 6e-18
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 87 8e-18
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 85 3e-17
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 85 3e-17
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 85 4e-17
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 83 2e-16
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 81 4e-16
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 79 2e-15
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 79 2e-15
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 79 2e-15
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 71 4e-13
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 71 7e-13
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 70 1e-12
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 63 1e-10
At2g28600.1 68415.m03476 expressed protein 61 4e-10
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 60 1e-09
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 56 1e-08
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 54 9e-08
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 49 2e-06
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 42 4e-04
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 40 0.002
At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein... 30 1.2
At1g15820.1 68414.m01898 chlorophyll A-B binding protein, chloro... 29 1.6
At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative EUKARY... 29 2.1
At3g60970.1 68416.m06823 ABC transporter family protein ABC tran... 29 2.8
At3g60160.1 68416.m06717 ABC transporter family protein similar ... 29 2.8
At5g27300.1 68418.m03260 pentatricopeptide (PPR) repeat-containi... 27 6.5
At2g27800.1 68415.m03370 pentatricopeptide (PPR) repeat-containi... 27 6.5
At4g13400.1 68417.m02093 expressed protein 27 8.7
At3g21130.1 68416.m02670 F-box family protein contains Pfam prof... 27 8.7
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 261 bits (639), Expect = 3e-70
Identities = 124/187 (66%), Positives = 148/187 (79%)
Frame = +1
Query: 1 YILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPK 180
Y+LPAIVH+N QP + GDGPI LVLAPTRELA QIQQ AS+FG+SS ++ TC++GG PK
Sbjct: 153 YLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPK 212
Query: 181 REQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIID 360
Q RDL++GVEIVIATPGRLID +E TNL+R TYLVLDEADRMLDMGF+PQIRKI+
Sbjct: 213 GPQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVS 272
Query: 361 QIRPDRQTLMWSATWPKEVRKLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKEN 540
IRPDRQTL WSATWPKEV +L++ +L + ++ IGS L AN I QIVDV E +K N
Sbjct: 273 HIRPDRQTLYWSATWPKEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKYN 332
Query: 541 KLNVLLQ 561
KL LL+
Sbjct: 333 KLVKLLE 339
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 248 bits (607), Expect = 2e-66
Identities = 119/187 (63%), Positives = 145/187 (77%)
Frame = +1
Query: 1 YILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPK 180
Y+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + +FG S VR+TC++GGAPK
Sbjct: 219 YLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPK 278
Query: 181 REQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIID 360
Q RDL RGVEIVIATPGRLID LE TNL+R TYLVLDEADRMLDMGFEPQIRKI+
Sbjct: 279 GPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVS 338
Query: 361 QIRPDRQTLMWSATWPKEVRKLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKEN 540
QIRPDRQTL+WSATWP+EV LA +L D + IGS L AN +I Q++++ EK N
Sbjct: 339 QIRPDRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYN 398
Query: 541 KLNVLLQ 561
+L LL+
Sbjct: 399 RLLTLLK 405
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 248 bits (607), Expect = 2e-66
Identities = 119/187 (63%), Positives = 145/187 (77%)
Frame = +1
Query: 1 YILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPK 180
Y+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + +FG S VR+TC++GGAPK
Sbjct: 219 YLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPK 278
Query: 181 REQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIID 360
Q RDL RGVEIVIATPGRLID LE TNL+R TYLVLDEADRMLDMGFEPQIRKI+
Sbjct: 279 GPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVS 338
Query: 361 QIRPDRQTLMWSATWPKEVRKLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKEN 540
QIRPDRQTL+WSATWP+EV LA +L D + IGS L AN +I Q++++ EK N
Sbjct: 339 QIRPDRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYN 398
Query: 541 KLNVLLQ 561
+L LL+
Sbjct: 399 RLLTLLK 405
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 206 bits (502), Expect = 1e-53
Identities = 104/188 (55%), Positives = 137/188 (72%), Gaps = 1/188 (0%)
Frame = +1
Query: 1 YILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPK 180
Y++PA + + + R +GP L+LAPTRELA QIQ A FG SS + TC++GGAPK
Sbjct: 489 YLIPAFILLRHCRNDSR-NGPTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPK 547
Query: 181 REQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIID 360
Q ++LERG +IV+ATPGRL D LE + Q+ + LVLDEADRMLDMGFEPQIRKI++
Sbjct: 548 GPQLKELERGADIVVATPGRLNDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVN 607
Query: 361 QIRPDRQTLMWSATWPKEVRKLAEDYLGDYVQINIGSL-QLSANHNILQIVDVCQEHEKE 537
+I P RQTLM++ATWPKEVRK+A D L + VQ+NIG + +L+AN I Q V+V + EKE
Sbjct: 608 EIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQMEKE 667
Query: 538 NKLNVLLQ 561
+L +L+
Sbjct: 668 RRLEQILR 675
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 200 bits (489), Expect = 4e-52
Identities = 102/188 (54%), Positives = 135/188 (71%), Gaps = 1/188 (0%)
Frame = +1
Query: 1 YILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPK 180
Y++P +H+ R GP LVL+PTRELA QIQ+ A +FG SS + TC++GGAPK
Sbjct: 212 YLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPK 270
Query: 181 REQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIID 360
Q RDLERG +IV+ATPGRL D LE +L++ +YLVLDEADRMLDMGFEPQIRKI+
Sbjct: 271 GPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVK 330
Query: 361 QIRPDRQTLMWSATWPKEVRKLAEDYLGDYVQINIGSL-QLSANHNILQIVDVCQEHEKE 537
+I RQTLM++ATWPK VRK+A D L + Q+NIG++ +L AN +I Q ++V EK+
Sbjct: 331 EIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQ 390
Query: 538 NKLNVLLQ 561
+L +L+
Sbjct: 391 RRLEQILR 398
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 200 bits (489), Expect = 4e-52
Identities = 102/188 (54%), Positives = 135/188 (71%), Gaps = 1/188 (0%)
Frame = +1
Query: 1 YILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPK 180
Y++P +H+ R GP LVL+PTRELA QIQ+ A +FG SS + TC++GGAPK
Sbjct: 212 YLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPK 270
Query: 181 REQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIID 360
Q RDLERG +IV+ATPGRL D LE +L++ +YLVLDEADRMLDMGFEPQIRKI+
Sbjct: 271 GPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVK 330
Query: 361 QIRPDRQTLMWSATWPKEVRKLAEDYLGDYVQINIGSL-QLSANHNILQIVDVCQEHEKE 537
+I RQTLM++ATWPK VRK+A D L + Q+NIG++ +L AN +I Q ++V EK+
Sbjct: 331 EIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQ 390
Query: 538 NKLNVLLQ 561
+L +L+
Sbjct: 391 RRLEQILR 398
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 200 bits (489), Expect = 4e-52
Identities = 102/188 (54%), Positives = 135/188 (71%), Gaps = 1/188 (0%)
Frame = +1
Query: 1 YILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPK 180
Y++P +H+ R GP LVL+PTRELA QIQ+ A +FG SS + TC++GGAPK
Sbjct: 212 YLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPK 270
Query: 181 REQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIID 360
Q RDLERG +IV+ATPGRL D LE +L++ +YLVLDEADRMLDMGFEPQIRKI+
Sbjct: 271 GPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVK 330
Query: 361 QIRPDRQTLMWSATWPKEVRKLAEDYLGDYVQINIGSL-QLSANHNILQIVDVCQEHEKE 537
+I RQTLM++ATWPK VRK+A D L + Q+NIG++ +L AN +I Q ++V EK+
Sbjct: 331 EIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQ 390
Query: 538 NKLNVLLQ 561
+L +L+
Sbjct: 391 RRLEQILR 398
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 198 bits (483), Expect = 2e-51
Identities = 99/188 (52%), Positives = 135/188 (71%), Gaps = 1/188 (0%)
Frame = +1
Query: 1 YILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPK 180
Y++P +H+ R GP LVL+PTRELA QIQ A +FG SS + C++GGAPK
Sbjct: 283 YLIPGFMHLQRIHNDSRM-GPTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPK 341
Query: 181 REQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIID 360
Q +++ERGV+IV+ATPGRL D LE +L + +YLVLDEADRMLDMGFEPQIRKI++
Sbjct: 342 GPQLKEIERGVDIVVATPGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVN 401
Query: 361 QIRPDRQTLMWSATWPKEVRKLAEDYLGDYVQINIGSL-QLSANHNILQIVDVCQEHEKE 537
++ RQTLM++ATWPKEVRK+A D L + Q+NIG++ +L AN +I Q ++V EK
Sbjct: 402 EVPTKRQTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKH 461
Query: 538 NKLNVLLQ 561
++L +L+
Sbjct: 462 SRLEQILR 469
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 189 bits (460), Expect = 1e-48
Identities = 89/172 (51%), Positives = 125/172 (72%)
Frame = +1
Query: 1 YILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPK 180
++LP IVHI +QP ++R +GPI ++ APTRELA QI A +F + +R + V+GG K
Sbjct: 282 FVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSK 341
Query: 181 REQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIID 360
EQ ++L+ G EIV+ATPGRLID L+ + R +YLVLDEADRM D+GFEPQ+R I+
Sbjct: 342 HEQFKELKAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVG 401
Query: 361 QIRPDRQTLMWSATWPKEVRKLAEDYLGDYVQINIGSLQLSANHNILQIVDV 516
QIRPDRQTL++SAT P +V KLA + L D +++ +G + + AN +I Q+V+V
Sbjct: 402 QIRPDRQTLLFSATMPWKVEKLAREILSDPIRVTVGEVGM-ANEDITQVVNV 452
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar to
RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 182 bits (443), Expect = 1e-46
Identities = 91/189 (48%), Positives = 128/189 (67%), Gaps = 3/189 (1%)
Frame = +1
Query: 1 YILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPK 180
++LP + HI +QPP+ GDGPI LV+APTREL QQI +F + + V+GG+
Sbjct: 450 FVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGV 509
Query: 181 REQARDLERGVEIVIATPGRLIDFLEKGT---TNLQRCTYLVLDEADRMLDMGFEPQIRK 351
+Q +L+RG EIV+ TPGR+ID L + TNL+R TYLV+DEADRM DMGFEPQI +
Sbjct: 510 AQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITR 569
Query: 352 IIDQIRPDRQTLMWSATWPKEVRKLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHE 531
I+ IRPDRQT+++SAT+P++V LA L V+I +G + N +I Q+V++ E E
Sbjct: 570 IVQNIRPDRQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSV-VNKDITQLVEIRPESE 628
Query: 532 KENKLNVLL 558
+ ++L LL
Sbjct: 629 RFSRLLELL 637
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 180 bits (437), Expect = 8e-46
Identities = 92/189 (48%), Positives = 127/189 (67%), Gaps = 3/189 (1%)
Frame = +1
Query: 1 YILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPK 180
++LP + HI +QPP+ GDGPI LV+APTREL QQI +F +R V+GG+
Sbjct: 583 FVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGV 642
Query: 181 REQARDLERGVEIVIATPGRLIDFL--EKG-TTNLQRCTYLVLDEADRMLDMGFEPQIRK 351
+Q +L+RG EIV+ TPGR+ID L G TNL+R T+LV+DEADRM DMGFEPQI +
Sbjct: 643 AQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITR 702
Query: 352 IIDQIRPDRQTLMWSATWPKEVRKLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHE 531
II IRP+RQT+++SAT+P++V LA L V+I +G + N +I Q+V+V E +
Sbjct: 703 IIQNIRPERQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSV-VNKDITQLVEVRPESD 761
Query: 532 KENKLNVLL 558
+ +L LL
Sbjct: 762 RFLRLLELL 770
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 161 bits (391), Expect = 3e-40
Identities = 83/174 (47%), Positives = 121/174 (69%), Gaps = 4/174 (2%)
Frame = +1
Query: 49 RGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIA 228
RG P+A++L+PTRELA QI A +F + V+ +GG P +Q R+LERGV+I++A
Sbjct: 221 RGVYPLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELERGVDILVA 280
Query: 229 TPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQI-RPD---RQTLMWS 396
TPGRL D LE+G +LQ +L LDEADRMLDMGFEPQIRKI+ Q+ P RQT+++S
Sbjct: 281 TPGRLNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFS 340
Query: 397 ATWPKEVRKLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLL 558
AT+P+E+++LA D+L +Y+ + +G + S+ I+Q V+ + +K + L LL
Sbjct: 341 ATFPREIQRLASDFLSNYIFLAVGRVG-SSTDLIVQRVEFVHDSDKRSHLMDLL 393
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 161 bits (390), Expect = 4e-40
Identities = 82/190 (43%), Positives = 121/190 (63%), Gaps = 5/190 (2%)
Frame = +1
Query: 7 LPAIVHI-NNQPPIRRGD---GPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGA 174
+PAI+H+ I G P LVL+PTRELA QI V E G +++ CV+GG+
Sbjct: 170 IPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGS 229
Query: 175 PKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKI 354
K Q + GV+IVI TPGRL D +E L +++VLDEADRMLDMGFE +R I
Sbjct: 230 SKGPQISAIRSGVDIVIGTPGRLRDLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFI 289
Query: 355 IDQIRPDRQTLMWSATWPKEVRKLAEDYLG-DYVQINIGSLQLSANHNILQIVDVCQEHE 531
+ RQ +M+SATWP +V KLA++++ + +++ IGS+ L+ANH+++QI++V E
Sbjct: 290 LSNTNKVRQMVMFSATWPLDVHKLAQEFMDPNPIKVIIGSVDLAANHDVMQIIEVLDERA 349
Query: 532 KENKLNVLLQ 561
++ +L LL+
Sbjct: 350 RDQRLIALLE 359
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 159 bits (386), Expect = 1e-39
Identities = 80/170 (47%), Positives = 119/170 (70%), Gaps = 4/170 (2%)
Frame = +1
Query: 61 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 240
P+A++L+PTRELA QI A +F + V+ +GG P +Q R+LERGV+I++ATPGR
Sbjct: 238 PLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGVDILVATPGR 297
Query: 241 LIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQI----RPDRQTLMWSATWP 408
L D LE+ ++Q +L LDEADRMLDMGFEPQIRKI++Q+ R RQTL++SAT+P
Sbjct: 298 LNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTLLFSATFP 357
Query: 409 KEVRKLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLL 558
+E+++LA D+L +Y+ + +G + S+ I+Q V+ + +K + L LL
Sbjct: 358 REIQRLAADFLANYIFLAVGRVG-SSTDLIVQRVEFVLDSDKRSHLMDLL 406
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 155 bits (375), Expect = 3e-38
Identities = 78/170 (45%), Positives = 116/170 (68%), Gaps = 4/170 (2%)
Frame = +1
Query: 61 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 240
P A++L+PTRELA QI A +F + V+ +GG P +Q R+LERG +I++ATPGR
Sbjct: 230 PFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGR 289
Query: 241 LIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQI----RPDRQTLMWSATWP 408
L D LE+ ++Q +L LDEADRMLDMGFEPQIRKI++Q+ R RQT+++SAT+P
Sbjct: 290 LNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFP 349
Query: 409 KEVRKLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLL 558
++++LA D++ +Y+ + +G + S+ I Q V+ QE +K + L LL
Sbjct: 350 SQIQRLAADFMSNYIFLAVGRVG-SSTDLITQRVEFVQESDKRSHLMDLL 398
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 155 bits (375), Expect = 3e-38
Identities = 78/170 (45%), Positives = 116/170 (68%), Gaps = 4/170 (2%)
Frame = +1
Query: 61 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 240
P A++L+PTRELA QI A +F + V+ +GG P +Q R+LERG +I++ATPGR
Sbjct: 230 PFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGR 289
Query: 241 LIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQI----RPDRQTLMWSATWP 408
L D LE+ ++Q +L LDEADRMLDMGFEPQIRKI++Q+ R RQT+++SAT+P
Sbjct: 290 LNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFP 349
Query: 409 KEVRKLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLL 558
++++LA D++ +Y+ + +G + S+ I Q V+ QE +K + L LL
Sbjct: 350 SQIQRLAADFMSNYIFLAVGRVG-SSTDLITQRVEFVQESDKRSHLMDLL 398
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 138 bits (333), Expect = 3e-33
Identities = 85/206 (41%), Positives = 121/206 (58%), Gaps = 20/206 (9%)
Frame = +1
Query: 1 YILPAIVHINNQPPI---RRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGG 171
++LP + +I+ PP+ +GP A+V+APTRELAQQI++ +F + R T + GG
Sbjct: 367 FVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGG 426
Query: 172 APKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRK 351
EQ + +G EIVIATPGRLID LE+ L +C Y+VLDEADRM+DMGFEPQ+
Sbjct: 427 QSIEEQGLKITQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAG 486
Query: 352 IID-----QIRPD------------RQTLMWSATWPKEVRKLAEDYLGDYVQINIGSLQL 480
++D ++P+ R T M+SAT P V +LA YL + V + IG+
Sbjct: 487 VLDAMPSSNLKPENEEEELDEKKIYRTTYMFSATMPPGVERLARKYLRNPVVVTIGTAGK 546
Query: 481 SANHNILQIVDVCQEHEKENKLNVLL 558
+ + I Q V + +E EK +L LL
Sbjct: 547 TTD-LISQHVIMMKESEKFFRLQKLL 571
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 132 bits (320), Expect = 1e-31
Identities = 70/171 (40%), Positives = 104/171 (60%), Gaps = 6/171 (3%)
Frame = +1
Query: 40 PIRRGDGPIALVLAPTRELAQQIQQVASEFG----NSSY--VRNTCVFGGAPKREQARDL 201
PI G+GPI L++ P+RELA+Q +V +F + Y +R+ GG R Q +
Sbjct: 216 PIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVV 275
Query: 202 ERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQ 381
+RGV IV+ATPGRL D L K +L C YL LDEADR++D+GFE IR++ D + RQ
Sbjct: 276 KRGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIREVFDHFKSQRQ 335
Query: 382 TLMWSATWPKEVRKLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEK 534
TL++SAT P +++ A L V +N+G +AN +++Q V+ ++ K
Sbjct: 336 TLLFSATMPTKIQIFARSALVKPVTVNVGRAG-AANLDVIQEVEYVKQEAK 385
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 129 bits (312), Expect = 1e-30
Identities = 74/187 (39%), Positives = 109/187 (58%), Gaps = 9/187 (4%)
Frame = +1
Query: 1 YILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQIQQVASEFGNS----SY--VRN 153
++LP I+ + PI G+GPIALV+ P+RELA+Q V +F S Y +R+
Sbjct: 151 FVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRS 210
Query: 154 TCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGF 333
GG R Q +++GV IV+ATPGRL D L K +L C L LDEADR++D+GF
Sbjct: 211 LLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGF 270
Query: 334 EPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLGDYVQINIGSLQLSANHNILQIVD 513
E IR + D + RQTL++SAT P +++ A L V +N+G +AN +++Q V+
Sbjct: 271 EDDIRHVFDHFKSQRQTLLFSATMPAKIQIFATSALVKPVTVNVGRAG-AANLDVIQEVE 329
Query: 514 VCQEHEK 534
++ K
Sbjct: 330 YVKQEAK 336
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 124 bits (298), Expect = 5e-29
Identities = 58/140 (41%), Positives = 95/140 (67%), Gaps = 1/140 (0%)
Frame = +1
Query: 49 RGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNT-CVFGGAPKREQARDLERGVEIVI 225
RG P+ LVLAPTRELA+Q+++ EF S+ +T C++GG P +Q R L+ GV++ +
Sbjct: 175 RGRNPLCLVLAPTRELARQVEK---EFRESAPSLDTICLYGGTPIGQQMRQLDYGVDVAV 231
Query: 226 ATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATW 405
TPGR+ID +++G NL ++VLDEAD+ML +GF + I++++ RQ++M+SAT
Sbjct: 232 GTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSATM 291
Query: 406 PKEVRKLAEDYLGDYVQINI 465
P +R L + YL + + +++
Sbjct: 292 PSWIRSLTKKYLNNPLTVDL 311
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 122 bits (293), Expect = 2e-28
Identities = 58/140 (41%), Positives = 93/140 (66%), Gaps = 1/140 (0%)
Frame = +1
Query: 49 RGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNT-CVFGGAPKREQARDLERGVEIVI 225
RG P LVLAPTRELA+Q+++ EF S+ +T C++GG P +Q R+L G+++ +
Sbjct: 187 RGKNPQCLVLAPTRELARQVEK---EFRESAPSLDTICLYGGTPIGQQMRELNYGIDVAV 243
Query: 226 ATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATW 405
TPGR+ID +++G NL ++VLDEAD+ML +GF + I+ ++ RQ++M+SAT
Sbjct: 244 GTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSMMFSATM 303
Query: 406 PKEVRKLAEDYLGDYVQINI 465
P +R L + YL + + I++
Sbjct: 304 PSWIRSLTKKYLNNPLTIDL 323
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 120 bits (289), Expect = 7e-28
Identities = 61/140 (43%), Positives = 90/140 (64%)
Frame = +1
Query: 46 RRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVI 225
R G P LVLAPTRELA+Q+++ E ++ Y+ CV+GG Q L RGV++V+
Sbjct: 176 RSGRLPKFLVLAPTRELAKQVEKEIKE--SAPYLSTVCVYGGVSYTIQQSALTRGVDVVV 233
Query: 226 ATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATW 405
TPGR+ID +E + L YLVLDEAD+ML +GFE + I++ + RQ++++SAT
Sbjct: 234 GTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATM 293
Query: 406 PKEVRKLAEDYLGDYVQINI 465
P V+KLA YL + + I++
Sbjct: 294 PTWVKKLARKYLDNPLNIDL 313
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 103 bits (247), Expect = 8e-23
Identities = 60/178 (33%), Positives = 93/178 (52%)
Frame = +1
Query: 28 NNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLER 207
+++ P + P+A+VLAPTREL Q++ A G + V GG P Q +++
Sbjct: 176 HSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQ 235
Query: 208 GVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTL 387
GVE++I TPGR++D L K T L VLDE D ML GF Q+ +I Q Q L
Sbjct: 236 GVELIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIF-QALSQPQVL 294
Query: 388 MWSATWPKEVRKLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQ 561
++SAT +EV K+ + + ++IG+ N + Q+ +K+ KL +L+
Sbjct: 295 LFSATISREVEKVGGSLAKEIILVSIGNPN-KPNKAVNQLAIWVDAKQKKQKLFDILR 351
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 103 bits (247), Expect = 8e-23
Identities = 60/178 (33%), Positives = 93/178 (52%)
Frame = +1
Query: 28 NNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLER 207
+++ P + P+A+VLAPTREL Q++ A G + V GG P Q +++
Sbjct: 39 HSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQ 98
Query: 208 GVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTL 387
GVE++I TPGR++D L K T L VLDE D ML GF Q+ +I Q Q L
Sbjct: 99 GVELIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIF-QALSQPQVL 157
Query: 388 MWSATWPKEVRKLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQ 561
++SAT +EV K+ + + ++IG+ N + Q+ +K+ KL +L+
Sbjct: 158 LFSATISREVEKVGGSLAKEIILVSIGNPN-KPNKAVNQLAIWVDAKQKKQKLFDILR 214
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 102 bits (244), Expect = 2e-22
Identities = 58/163 (35%), Positives = 88/163 (53%)
Frame = +1
Query: 67 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 246
A++L PTRELA Q QV E + GG R+ L + V +++ TPGR++
Sbjct: 225 AVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRIL 284
Query: 247 DFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKL 426
D +KG L+ C LV+DEAD++L + F+P I ++I + RQ LM+SAT+P V+
Sbjct: 285 DLAKKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQFLPESRQILMFSATFPVTVKSF 344
Query: 427 AEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVL 555
+ YL IN+ QL+ + Q +E +K + LN L
Sbjct: 345 KDRYLKKPYIINLMD-QLTL-MGVTQYYAFVEERQKVHCLNTL 385
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 101 bits (243), Expect = 3e-22
Identities = 61/184 (33%), Positives = 101/184 (54%), Gaps = 9/184 (4%)
Frame = +1
Query: 1 YILPAIVHINNQPPIRR-----GDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVF 165
++LP + + N P + G P LVL PTRELA+Q+ +G S + + C++
Sbjct: 150 FVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSLGLSSCCLY 209
Query: 166 GGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 345
GG Q L+RGV+IV+ TPGR+ D +E+ + + VLDEAD ML MGF +
Sbjct: 210 GGDSYPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLRMGFVEDV 269
Query: 346 RKIIDQIRPDR--QTLMWSATWPKEVRKLAEDYL-GDYVQIN-IGSLQLSANHNILQIVD 513
I+ ++ QTL++SAT P V+ ++ +L D I+ +G+ ++ A++++ I
Sbjct: 270 ELILGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSVRHIAI 329
Query: 514 VCQE 525
C +
Sbjct: 330 PCNK 333
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 101 bits (242), Expect = 3e-22
Identities = 55/163 (33%), Positives = 90/163 (55%)
Frame = +1
Query: 67 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 246
A+++ PTRELA Q QV E G ++ GG ++ L + V +++ TPGR++
Sbjct: 202 AVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRIL 261
Query: 247 DFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKL 426
D +KG L+ C+ LV+DEAD++L F+P + +I + RQ LM+SAT+P V+
Sbjct: 262 DLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSATFPVTVKDF 321
Query: 427 AEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVL 555
+ +L + IN+ +L+ I Q +E +K + LN L
Sbjct: 322 KDRFLTNPYVINLMD-ELTLK-GITQFYAFVEERQKIHCLNTL 362
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 101 bits (242), Expect = 3e-22
Identities = 55/163 (33%), Positives = 90/163 (55%)
Frame = +1
Query: 67 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 246
A+++ PTRELA Q QV E G ++ GG ++ L + V +++ TPGR++
Sbjct: 202 AVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRIL 261
Query: 247 DFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKL 426
D +KG L+ C+ LV+DEAD++L F+P + +I + RQ LM+SAT+P V+
Sbjct: 262 DLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSATFPVTVKDF 321
Query: 427 AEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVL 555
+ +L + IN+ +L+ I Q +E +K + LN L
Sbjct: 322 KDRFLTNPYVINLMD-ELTLK-GITQFYAFVEERQKIHCLNTL 362
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 100 bits (239), Expect = 8e-22
Identities = 56/163 (34%), Positives = 89/163 (54%)
Frame = +1
Query: 67 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 246
A++L PTRELA Q QV E ++ GG R+ L + V +++ TPGR++
Sbjct: 195 AMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRIL 254
Query: 247 DFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKL 426
D +KG L+ C LV+DEAD++L F+P + ++I + +RQ LM+SAT+P V+
Sbjct: 255 DLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSATFPVTVKAF 314
Query: 427 AEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVL 555
+ +L IN+ QL+ + Q +E +K + LN L
Sbjct: 315 KDRHLRKPYVINLMD-QLTL-MGVTQYYAFVEERQKVHCLNTL 355
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 100 bits (239), Expect = 8e-22
Identities = 56/163 (34%), Positives = 89/163 (54%)
Frame = +1
Query: 67 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 246
A++L PTRELA Q QV E ++ GG R+ L + V +++ TPGR++
Sbjct: 195 AMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRIL 254
Query: 247 DFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKL 426
D +KG L+ C LV+DEAD++L F+P + ++I + +RQ LM+SAT+P V+
Sbjct: 255 DLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSATFPVTVKAF 314
Query: 427 AEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVL 555
+ +L IN+ QL+ + Q +E +K + LN L
Sbjct: 315 KDRHLRKPYVINLMD-QLTL-MGVTQYYAFVEERQKVHCLNTL 355
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 100 bits (239), Expect = 8e-22
Identities = 54/131 (41%), Positives = 74/131 (56%)
Frame = +1
Query: 67 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 246
ALVLAPTRELAQQI++V G+ V+ GG RE R L+ GV +V+ TPGR+
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVF 169
Query: 247 DFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKL 426
D L++ + VLDEAD ML GF+ QI I + P Q ++SAT P E ++
Sbjct: 170 DMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEI 229
Query: 427 AEDYLGDYVQI 459
++ V+I
Sbjct: 230 TRKFMSKPVRI 240
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 98.7 bits (235), Expect = 2e-21
Identities = 54/131 (41%), Positives = 73/131 (55%)
Frame = +1
Query: 67 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 246
ALVLAPTRELAQQI++V G+ V+ GG RE R L+ GV +V+ TPGR+
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVF 169
Query: 247 DFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKL 426
D L + + VLDEAD ML GF+ QI I + P Q ++SAT P E ++
Sbjct: 170 DMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEI 229
Query: 427 AEDYLGDYVQI 459
++ V+I
Sbjct: 230 TRKFMSKPVRI 240
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 98.3 bits (234), Expect = 3e-21
Identities = 52/145 (35%), Positives = 87/145 (60%), Gaps = 1/145 (0%)
Frame = +1
Query: 1 YILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPK 180
+++P + + P +G G AL+L+PTR+LA+Q + E G + +R + + GG
Sbjct: 82 FLIPMLEKLKQHVP--QG-GVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSM 138
Query: 181 REQARDLERGVEIVIATPGRLIDFL-EKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKII 357
+Q +L +G +++IATPGRL+ L E L+ Y+V DEAD + MGF Q+ +I+
Sbjct: 139 EDQFEELTKGPDVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQIL 198
Query: 358 DQIRPDRQTLMWSATWPKEVRKLAE 432
Q+ +RQTL++SAT P + + A+
Sbjct: 199 TQLSENRQTLLFSATLPSALAEFAK 223
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 97.1 bits (231), Expect = 7e-21
Identities = 53/131 (40%), Positives = 72/131 (54%)
Frame = +1
Query: 67 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 246
ALVLAPTRELAQQI++V G+ V+ GG RE R L+ GV +V+ TPGR+
Sbjct: 112 ALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGVHVVVGTPGRVF 171
Query: 247 DFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKL 426
D L + + VLDEAD ML GF+ QI I + Q ++SAT P E ++
Sbjct: 172 DLLRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEI 231
Query: 427 AEDYLGDYVQI 459
++ V+I
Sbjct: 232 TRKFMNKPVRI 242
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 93.9 bits (223), Expect = 7e-20
Identities = 54/159 (33%), Positives = 85/159 (53%)
Frame = +1
Query: 70 LVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 249
LVL+P+RELA Q ++ G + ++ GG E + LERGV V TPGR+ D
Sbjct: 94 LVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIGEDIKKLERGVHAVSGTPGRVYD 153
Query: 250 FLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLA 429
+++G+ + LVLDE+D ML G + QI + + D Q + SAT P+E+ ++
Sbjct: 154 MIKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPHDIQVCLISATLPQEILEMT 213
Query: 430 EDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKL 546
E ++ D V+I + +L+ VDV +E K + L
Sbjct: 214 EKFMTDPVRILVKPDELTLEGIKQYYVDVDKEEWKFDTL 252
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 92.7 bits (220), Expect = 2e-19
Identities = 55/137 (40%), Positives = 82/137 (59%), Gaps = 2/137 (1%)
Frame = +1
Query: 67 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 246
A VL+PTRELA QI + G +R + GG + +Q L + +++ATPGRL
Sbjct: 92 ACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRMQQTIALGKRPHVIVATPGRLW 151
Query: 247 DFLE--KGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVR 420
D + KG + L+ YLVLDEADR+L+ FE + +I+++I +R+T ++SAT K+VR
Sbjct: 152 DHMSDTKGFS-LKSLKYLVLDEADRLLNEDFEKSLNQILEEIPLERKTFLFSATMTKKVR 210
Query: 421 KLAEDYLGDYVQINIGS 471
KL L + V+I S
Sbjct: 211 KLQRACLRNPVKIEAAS 227
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 92.3 bits (219), Expect = 2e-19
Identities = 46/131 (35%), Positives = 73/131 (55%)
Frame = +1
Query: 67 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 246
AL+L+PTRELA Q ++ G + ++ GG E R LE GV +V TPGR+
Sbjct: 106 ALILSPTRELATQTEKTIQAIGLHANIQAHACIGGNSVGEDIRKLEHGVHVVSGTPGRVC 165
Query: 247 DFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKL 426
D +++ + + L+LDE+D ML GF+ QI + + PD Q + SAT P E+ ++
Sbjct: 166 DMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQVCLVSATLPHEILEM 225
Query: 427 AEDYLGDYVQI 459
++ + V+I
Sbjct: 226 TSKFMTEPVKI 236
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 90.6 bits (215), Expect = 6e-19
Identities = 58/178 (32%), Positives = 93/178 (52%), Gaps = 11/178 (6%)
Frame = +1
Query: 61 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 240
P +VL PTREL++Q+ +VA + + R+ V GG+ R Q L +++V+ TPGR
Sbjct: 190 PRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSRIRPQEDSLNNAIDMVVGTPGR 249
Query: 241 LIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRP------DR--QTLMWS 396
++ +E+G YLVLDEAD M D GF P+IRK + + D+ QT++ +
Sbjct: 250 ILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEIRKFLAPLNQRALKTNDQGFQTVLVT 309
Query: 397 ATWPKEVRKLAEDYLGDYVQINIGSLQ---LSANHNILQIVDVCQEHEKENKLNVLLQ 561
AT V+KL ++ + +L +A H+ +++ E+KL LLQ
Sbjct: 310 ATMTMAVQKLVDEEFQGIEHLRTSTLHKKIANARHDFIKL------SGGEDKLEALLQ 361
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 90.2 bits (214), Expect = 8e-19
Identities = 55/141 (39%), Positives = 80/141 (56%), Gaps = 1/141 (0%)
Frame = +1
Query: 46 RRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVI 225
R G G LV+ PTRELA Q VA E V GG ++ +A L +GV +++
Sbjct: 224 RNGTG--VLVICPTRELAIQSYGVAKELLKYHSQTVGKVIGGEKRKTEAEILAKGVNLLV 281
Query: 226 ATPGRLIDFLEKGTTNL-QRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSAT 402
ATPGRL+D LE + + +LV+DEADR+L+ FE ++KI++ + RQT ++SAT
Sbjct: 282 ATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNLLPKTRQTSLFSAT 341
Query: 403 WPKEVRKLAEDYLGDYVQINI 465
+V LA L V I++
Sbjct: 342 QSAKVEDLARVSLTSPVYIDV 362
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 89.4 bits (212), Expect = 1e-18
Identities = 65/188 (34%), Positives = 102/188 (54%), Gaps = 11/188 (5%)
Frame = +1
Query: 1 YILPAIVHI----NNQPPIRRGDGPIALVLAPTRELAQQIQ---QVASEFGNSSYVRNTC 159
++LPAI + N+ + + AL+L PTRELA QI + +F + V+ T
Sbjct: 382 FLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQIAAEGKALLKFHDGIGVQ-TL 440
Query: 160 VFGGAPKREQARDLERGVEIVIATPGRLIDFLEKG---TTNLQRCTYLVLDEADRMLDMG 330
+ G K +Q R +I+IATPGRL+D +E T+ L ++DEAD +LD+G
Sbjct: 441 IGGTRFKLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLG 500
Query: 331 FEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYL-GDYVQINIGSLQLSANHNILQI 507
F + KIID + RQ+L++SAT PKEVR++++ L D+ I+ L H+ ++
Sbjct: 501 FRRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQLVLKRDHSYIDTIGLGCVETHDKVRQ 560
Query: 508 VDVCQEHE 531
+ HE
Sbjct: 561 SCIVAPHE 568
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 89.0 bits (211), Expect = 2e-18
Identities = 60/150 (40%), Positives = 79/150 (52%), Gaps = 8/150 (5%)
Frame = +1
Query: 1 YILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQIQQVASEFGN-SSYVRNTCVFG 168
++LPAI + PP R I LV+ PTRELA Q A+ + V G
Sbjct: 436 FLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIG 495
Query: 169 GAP-KREQARDLERGVEIVIATPGRLIDFLEKGT---TNLQRCTYLVLDEADRMLDMGFE 336
G EQ R +I++ATPGRL D +E + T L LVLDEAD +LDMGF
Sbjct: 496 GTKLPTEQRRMQTNPCQILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFR 555
Query: 337 PQIRKIIDQIRPDRQTLMWSATWPKEVRKL 426
I +II + RQT ++SAT P+EVR++
Sbjct: 556 RDIERIIAAVPKQRQTFLFSATVPEEVRQI 585
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 88.6 bits (210), Expect = 3e-18
Identities = 56/157 (35%), Positives = 87/157 (55%), Gaps = 2/157 (1%)
Frame = +1
Query: 1 YILPAI-VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAP 177
+++PA+ + + R G G I V+ PTRELA Q + VA E + V GG
Sbjct: 143 FLIPAVELLFKERFSPRNGTGVI--VICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNN 200
Query: 178 KREQARDLERGVEIVIATPGRLIDFLEKGTTNL-QRCTYLVLDEADRMLDMGFEPQIRKI 354
+R +A+ + G +VIATPGRL+D L+ + + LV+DEADR+L+ FE + KI
Sbjct: 201 RRSEAQRIASGSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEEDMNKI 260
Query: 355 IDQIRPDRQTLMWSATWPKEVRKLAEDYLGDYVQINI 465
+ + RQT ++SAT +V+ LA L V +++
Sbjct: 261 LKILPKTRQTALFSATQTSKVKDLARVSLTSPVHVDV 297
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 87.8 bits (208), Expect = 4e-18
Identities = 51/145 (35%), Positives = 80/145 (55%), Gaps = 1/145 (0%)
Frame = +1
Query: 1 YILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPK 180
+ LP + + +P +R L+L PTRELA QI + + ++ + GG
Sbjct: 221 FALPTLERLLFRP--KRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSV 278
Query: 181 REQARDLERGVEIVIATPGRLIDFLEKG-TTNLQRCTYLVLDEADRMLDMGFEPQIRKII 357
REQ L +IV+ATPGR+ID L + +L L+LDEADR+L GF +I +++
Sbjct: 279 REQEVVLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELV 338
Query: 358 DQIRPDRQTLMWSATWPKEVRKLAE 432
RQT+++SAT +EV++L +
Sbjct: 339 RLCPKRRQTMLFSATMTEEVKELVK 363
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 87.8 bits (208), Expect = 4e-18
Identities = 64/187 (34%), Positives = 98/187 (52%), Gaps = 10/187 (5%)
Frame = +1
Query: 1 YILPAIVHINNQPPIRRGDGPIA----LVLAPTRELAQQIQQVASEF-GNSSYVRNTCVF 165
++LPAI + +G +A L+L PTRELA QI N + +
Sbjct: 429 FLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQIAAEGKALLKNHDGIGVQTLI 488
Query: 166 GGAPKREQARDLE-RGVEIVIATPGRLIDFLEKG---TTNLQRCTYLVLDEADRMLDMGF 333
GG R + LE +I+IATPGRL+D +E T+ L ++DEAD +LD+GF
Sbjct: 489 GGTRFRLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGF 548
Query: 334 EPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYL-GDYVQINIGSLQLSANHNILQIV 510
+ + KIID + RQ+L++SAT PKEVR++++ L D+ I+ L H+ ++
Sbjct: 549 KRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQLVLKRDHSYIDTIGLGCVETHDKVKQS 608
Query: 511 DVCQEHE 531
+ HE
Sbjct: 609 CIVAPHE 615
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 87.4 bits (207), Expect = 6e-18
Identities = 60/150 (40%), Positives = 82/150 (54%), Gaps = 8/150 (5%)
Frame = +1
Query: 1 YILPAIVHINNQPPIRRGDG--PI-ALVLAPTRELAQQIQQVASEFGN-SSYVRNTCVFG 168
++LP+I + PP + PI ALV+ PTRELA Q A+ + V G
Sbjct: 108 FLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIGVQVVIG 167
Query: 169 GAPKR-EQARDLERGVEIVIATPGRLIDFLEKG---TTNLQRCTYLVLDEADRMLDMGFE 336
G EQ R +I++ATPGRL D +E T L+ LVLDEAD +LDMGF
Sbjct: 168 GTRLGLEQKRMQTNPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFR 227
Query: 337 PQIRKIIDQIRPDRQTLMWSATWPKEVRKL 426
I +II + +RQT ++SAT P+EVR++
Sbjct: 228 KDIERIISAVPKERQTFLFSATVPEEVRQI 257
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 87.0 bits (206), Expect = 8e-18
Identities = 62/193 (32%), Positives = 106/193 (54%), Gaps = 7/193 (3%)
Frame = +1
Query: 1 YILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNS-SYVRNTCVFG 168
++LP I I N+ PP + + ++++PTREL+ QI +VA F ++ V + + G
Sbjct: 70 FLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVG 127
Query: 169 GAPKREQARDLER-GVEIVIATPGRLIDFLEKGT-TNLQRCTYLVLDEADRMLDMGFEPQ 342
G LE G ++I TPGRL D +++ + + L+LDEADR+LDMGF+ Q
Sbjct: 128 GREVEADMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQ 187
Query: 343 IRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLGDYVQINIGSLQLSANHNILQIVDV-C 519
+ II ++ R+T ++SAT + V LA+ L + +++ G+ S + L + C
Sbjct: 188 VNYIISRLPKQRRTGLFSATQTQAVADLAKAGLRNAMEVISGAESKSKTSSGLYCEYLKC 247
Query: 520 QEHEKENKLNVLL 558
+ +K ++L LL
Sbjct: 248 EADQKSSQLVHLL 260
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 85.0 bits (201), Expect = 3e-17
Identities = 47/137 (34%), Positives = 84/137 (61%), Gaps = 3/137 (2%)
Frame = +1
Query: 64 IALVLAPTRELAQQIQQVASEFGNS-SYVRNTCVFGGAPKREQARDLER-GVEIVIATPG 237
+ ++++PTREL+ QI VA F ++ + V + + GG + + +E G ++I TPG
Sbjct: 92 MGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEGCNVLIGTPG 151
Query: 238 RLIDFLEK-GTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKE 414
RL D +E+ + + L+LDEADR+L+MGF+ Q+ II ++ R+T ++SAT +
Sbjct: 152 RLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRLPKQRRTGLFSATQTEG 211
Query: 415 VRKLAEDYLGDYVQINI 465
V +LA+ L + V++ +
Sbjct: 212 VEELAKAGLRNPVRVEV 228
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 85.0 bits (201), Expect = 3e-17
Identities = 59/185 (31%), Positives = 97/185 (52%), Gaps = 19/185 (10%)
Frame = +1
Query: 1 YILPAIVHIN-NQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNS-SYVRNTCVFGGA 174
Y+ P I H+ + P + R G ALV+ PTREL Q+ + + + ++ V GG
Sbjct: 84 YLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGE 143
Query: 175 PKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQR-CTYLVLDEADRMLDMGFEPQIRK 351
K ++ L +G+ I+IATPGRL+D L+ + + + +++ DEAD +L++G+ +I +
Sbjct: 144 KKAKEKARLRKGISILIATPGRLLDHLKNTASFVHKNLRWVIFDEADSILELGYGKEIEQ 203
Query: 352 II-------------DQIRP---DRQTLMWSATWPKEVRKLAEDYLGDYVQINIGSLQLS 483
II D I P +Q L+ SAT +V LA+ L D V I + + +L
Sbjct: 204 IIKLLGSGQNEQGEEDDIVPKGIQKQNLLLSATLNDKVNDLAKLSLDDPVMIGLDNTKLQ 263
Query: 484 ANHNI 498
N +I
Sbjct: 264 QNLSI 268
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 84.6 bits (200), Expect = 4e-17
Identities = 50/128 (39%), Positives = 69/128 (53%), Gaps = 3/128 (2%)
Frame = +1
Query: 58 GPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 237
G ALV+ PTRELA Q+ + G+ +R + + GG Q L IVI TPG
Sbjct: 126 GVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSRPHIVITTPG 185
Query: 238 RLIDFLEKGTTN---LQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWP 408
R+ LE R +LVLDEADR+LD+GF+ ++R I + RQTL++SAT
Sbjct: 186 RIKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLPKSRQTLLFSATMT 245
Query: 409 KEVRKLAE 432
++ L E
Sbjct: 246 SNLQALLE 253
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 82.6 bits (195), Expect = 2e-16
Identities = 58/152 (38%), Positives = 85/152 (55%), Gaps = 10/152 (6%)
Frame = +1
Query: 1 YILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQIQQVAS---EFGNSSYVRNTCV 162
++LP+I + PP R + I LV+ PTRELA Q A+ ++ S V+ V
Sbjct: 134 FLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQ--VV 191
Query: 163 FGGAPKREQARDLERG-VEIVIATPGRLIDFLEKGT---TNLQRCTYLVLDEADRMLDMG 330
GG + R L++ +I++ATPGRL D ++ + T L LVLDEAD +LDMG
Sbjct: 192 IGGTKLPTEQRRLQKSPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMG 251
Query: 331 FEPQIRKIIDQIRPDRQTLMWSATWPKEVRKL 426
F +I +II + RQT ++SAT EVR++
Sbjct: 252 FRREIERIIAAVPKQRQTFLFSATVSDEVRQI 283
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 81.4 bits (192), Expect = 4e-16
Identities = 53/167 (31%), Positives = 92/167 (55%), Gaps = 3/167 (1%)
Frame = +1
Query: 55 DGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATP 234
DG ++++PTRELA Q V ++ G + GG + ++ + I++ P
Sbjct: 142 DGVGCIIISPTRELAAQTFGVLNKVGKFHKFSAGLLIGGREGVDVEKERVHEMNILVCAP 201
Query: 235 GRLIDFLEKGTTNLQ--RCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWP 408
GRL+ +++ T N + + L+LDEADR+LD F+ Q+ II Q+ RQTL++SAT
Sbjct: 202 GRLLQHMDE-TPNFECPQLQILILDEADRVLDSAFKGQLDPIISQLPKHRQTLLFSATQT 260
Query: 409 KEVRKLAEDYLGDYVQINIGSLQLSAN-HNILQIVDVCQEHEKENKL 546
K+V+ LA L D I++ + ++A +++Q V + +K + L
Sbjct: 261 KKVKDLARLSLRDPEYISVHAEAVTATPTSLMQTVMIVPVEKKLDML 307
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 79.4 bits (187), Expect = 2e-15
Identities = 55/169 (32%), Positives = 88/169 (52%), Gaps = 5/169 (2%)
Frame = +1
Query: 67 ALVLAPTRELAQQIQQVASEFGNSSYVRNT--CVFGGAPKREQARDLERGV--EIVIATP 234
ALVL TRELA QI F S+Y+ +T VF G + +DL + IV+ TP
Sbjct: 117 ALVLCHTRELAYQICNEFVRF--STYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTP 174
Query: 235 GRLIDFLEKGTTNLQRCTYLVLDEADRMLD-MGFEPQIRKIIDQIRPDRQTLMWSATWPK 411
GR++ + +L+ + +LDE D+ML+ + +++I D+Q +M+SAT K
Sbjct: 175 GRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSK 234
Query: 412 EVRKLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLL 558
E+R + + ++ D ++I + H ++Q E EK KLN LL
Sbjct: 235 EIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLL 283
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 79.0 bits (186), Expect = 2e-15
Identities = 55/169 (32%), Positives = 88/169 (52%), Gaps = 5/169 (2%)
Frame = +1
Query: 67 ALVLAPTRELAQQIQQVASEFGNSSYVRNT--CVFGGAPKREQARDLERGV--EIVIATP 234
ALVL TRELA QI F S+Y+ +T VF G + +DL + IV+ TP
Sbjct: 34 ALVLCHTRELAYQICNEFVRF--STYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTP 91
Query: 235 GRLIDFLEKGTTNLQRCTYLVLDEADRMLD-MGFEPQIRKIIDQIRPDRQTLMWSATWPK 411
GR++ + +L+ + +LDE D+ML+ + +++I D+Q +M+SAT K
Sbjct: 92 GRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSK 151
Query: 412 EVRKLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLL 558
E+R + + ++ D ++I + H ++Q E EK KLN LL
Sbjct: 152 EIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKTRKLNDLL 200
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 79.0 bits (186), Expect = 2e-15
Identities = 55/169 (32%), Positives = 88/169 (52%), Gaps = 5/169 (2%)
Frame = +1
Query: 67 ALVLAPTRELAQQIQQVASEFGNSSYVRNT--CVFGGAPKREQARDLERGV--EIVIATP 234
ALVL TRELA QI F S+Y+ +T VF G + +DL + IV+ TP
Sbjct: 117 ALVLCHTRELAYQICNEFVRF--STYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTP 174
Query: 235 GRLIDFLEKGTTNLQRCTYLVLDEADRMLD-MGFEPQIRKIIDQIRPDRQTLMWSATWPK 411
GR++ + +L+ + +LDE D+ML+ + +++I D+Q +M+SAT K
Sbjct: 175 GRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSK 234
Query: 412 EVRKLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLL 558
E+R + + ++ D ++I + H ++Q E EK KLN LL
Sbjct: 235 EIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKTRKLNDLL 283
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 71.3 bits (167), Expect = 4e-13
Identities = 54/152 (35%), Positives = 84/152 (55%), Gaps = 8/152 (5%)
Frame = +1
Query: 1 YILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGG 171
++LP I I N+ PP + + ++++PTREL+ QI +VA VR
Sbjct: 71 FLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVARA------VR----LDF 118
Query: 172 APKREQARDL----ERGVEIVIATPGRLIDFLEKGT-TNLQRCTYLVLDEADRMLDMGFE 336
A RE D+ E G ++I TPGRL D +++ + + L+LDEADR+LDMGF+
Sbjct: 119 AKCREVEADMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQ 178
Query: 337 PQIRKIIDQIRPDRQTLMWSATWPKEVRKLAE 432
Q+ II ++ R+T ++SAT + V LA+
Sbjct: 179 KQVNYIISRLPKQRRTGLFSATQTQAVADLAK 210
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 70.5 bits (165), Expect = 7e-13
Identities = 45/127 (35%), Positives = 64/127 (50%), Gaps = 3/127 (2%)
Frame = +1
Query: 61 PIALVLAPTRELAQQIQQVASEFGNSSY-VRNTCVFGGAPKREQARDLERGVEIVIATPG 237
P +VL PT ELA Q+ S R+ V GG +R Q +LE+GV+++IATPG
Sbjct: 452 PRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQRTQLENLEQGVDVLIATPG 511
Query: 238 RLIDFLEKGTTNLQRCTYLVLDEADRML-DMGFEPQIRKIIDQIRPDRQTLMWSATWPKE 414
R + +G L +LDE D + D FE ++ +I+ Q L +AT P E
Sbjct: 512 RFTYLMNEGILGLSNLRCAILDEVDILFGDDEFEAALQNLINSSPVTAQYLFVTATLPLE 571
Query: 415 V-RKLAE 432
+ KL E
Sbjct: 572 IYNKLVE 578
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 69.7 bits (163), Expect = 1e-12
Identities = 38/101 (37%), Positives = 58/101 (57%), Gaps = 3/101 (2%)
Frame = +1
Query: 67 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 246
AL++ PTRELA Q+ + + V+ + GG +Q R L+ EIV+ATPGRL
Sbjct: 282 ALIITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRLW 341
Query: 247 DFL---EKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIID 360
+ + EK L ++ VLDEADRM++ G +++ I+D
Sbjct: 342 ELMSAGEKHLVELHSLSFFVLDEADRMVERGHFRELQSILD 382
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 62.9 bits (146), Expect = 1e-10
Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 16/140 (11%)
Frame = +1
Query: 67 ALVLAPTRELAQQI-QQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVE-IVIATPGR 240
A+++AP+REL QI ++V G + GGA + Q L++ IV+ TPGR
Sbjct: 194 AMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGGANRMRQEEALKKNKPAIVVGTPGR 253
Query: 241 LIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQI--------------RPDR 378
+ + + G + C +LVLDE D +L F I +I++ + R +R
Sbjct: 254 IAEISKGGKLHTHGCRFLVLDEVDELLSFNFREDIHRILEHVGKRSGAGPKGEVDERANR 313
Query: 379 QTLMWSATWPKEVRKLAEDY 438
QT++ SAT P V + A+ +
Sbjct: 314 QTILVSATVPFSVIRAAKSW 333
>At2g28600.1 68415.m03476 expressed protein
Length = 502
Score = 61.3 bits (142), Expect = 4e-10
Identities = 39/164 (23%), Positives = 73/164 (44%), Gaps = 2/164 (1%)
Frame = +1
Query: 52 GDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLER-GVEIVIA 228
G+ P L L P++ A Q++ V + + GAP Q L+ E ++A
Sbjct: 194 GNSPFLLYLVPSQSKASQVRSVCKALKGIG-IHTVSLHQGAPLDHQISGLKSVEPEFIVA 252
Query: 229 TPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWP 408
TP RL++ + ++ + LV+DE + G+ ++ I I QT++++ ++
Sbjct: 253 TPERLLEIVTLKGVDISNVSLLVIDELGSLCSGGYLNAVKSIKQAISSKHQTIVFNNSFS 312
Query: 409 KEVRKLAEDYLGDYV-QINIGSLQLSANHNILQIVDVCQEHEKE 537
+ + +LG V ++ + S I Q V VC EK+
Sbjct: 313 ASIIPAVQSFLGGSVNRVTVNESVASQGSCITQTVSVCASEEKK 356
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 59.7 bits (138), Expect = 1e-09
Identities = 50/171 (29%), Positives = 81/171 (47%), Gaps = 6/171 (3%)
Frame = +1
Query: 61 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQA--RDLERGVEIVIATP 234
P AL + PTRELA Q +V + G + + + + A R +VI TP
Sbjct: 163 PQALCICPTRELANQNMEVLQKMGKFTGITAELAVPDSTRGAPAATRGAPVSAHVVIGTP 222
Query: 235 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDM-GFEP---QIRKIIDQIRPDRQTLMWSAT 402
G L ++ L LV DEAD ML GF +I K I ++ P+ Q L++SAT
Sbjct: 223 GTLKKWMAFKRLGLNHLKILVFDEADHMLATDGFRDDSLKIMKDIGRVNPNFQVLLFSAT 282
Query: 403 WPKEVRKLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVL 555
+ + V+ + D Q+ + L+ + ++ Q VC +++NK+ V+
Sbjct: 283 FNETVKDFVARTVKDPNQLFVKREDLALD-SVKQYKVVCP--KEQNKIEVI 330
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 56.4 bits (130), Expect = 1e-08
Identities = 41/141 (29%), Positives = 72/141 (51%), Gaps = 3/141 (2%)
Frame = +1
Query: 55 DGPIALVLAPTRELAQQIQQVASEF--GNSSYVRNTCVFGGAPKREQARDLERGVEIVIA 228
DG A++L+P RELA Q + + G++ ++R P + A + +++I+
Sbjct: 209 DGIRAVILSPARELAAQTAREGKKLIKGSNFHIRLMT----KPLVKTADFSKLWCDVLIS 264
Query: 229 TPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQI-RPDRQTLMWSATW 405
TP RL ++ +L + YLVLDE+D++ + QI ++ P ++SAT
Sbjct: 265 TPMRLKRAIKAKKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVKACSNPSIIRSLFSATL 324
Query: 406 PKEVRKLAEDYLGDYVQINIG 468
P V +LA + D V++ IG
Sbjct: 325 PDSVEELARSIMHDAVRVIIG 345
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 53.6 bits (123), Expect = 9e-08
Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 7/149 (4%)
Frame = +1
Query: 1 YILPAIVHINNQPPIRRGD-GPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCV-FGGA 174
Y+LP + + + + + P A +L P+REL QQ+ S V+ V +
Sbjct: 100 YLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQVYTEVSSLIELCRVQLKAVQLTSS 159
Query: 175 PKREQARDLERGV-EIVIATPGRLIDFLEKG----TTNLQRCTYLVLDEADRMLDMGFEP 339
R+ G+ EI+++TP + G T + + LVLDEAD +L G+E
Sbjct: 160 MSASDMRNALAGLPEILVSTPACIPKCFAAGVLEPTAVSESLSILVLDEADLLLSYGYED 219
Query: 340 QIRKIIDQIRPDRQTLMWSATWPKEVRKL 426
+R + I Q L+ SAT +V KL
Sbjct: 220 NLRSVTSIIPRRCQCLLMSATTSSDVEKL 248
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 48.8 bits (111), Expect = 2e-06
Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 23/135 (17%)
Frame = +1
Query: 67 ALVLAPTRELAQQIQQV------------ASEFGNSSYVRNTCVFGGAPKREQ------- 189
ALV+ PTR+LA Q++ V S G SS PK +
Sbjct: 97 ALVVLPTRDLALQVKDVFDAIAPAVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPD 156
Query: 190 --ARDLERGVEIVIATPGRLIDFLE--KGTTNLQRCTYLVLDEADRMLDMGFEPQIRKII 357
+++LE V+I++ATPGRL+D + KG T L+ YLV+DE DR+L ++ + ++
Sbjct: 157 DLSQNLESAVDILVATPGRLMDHINNTKGFT-LEHLRYLVVDETDRLLREAYQSWLPTVL 215
Query: 358 DQIRPDRQTLMWSAT 402
+ +L S T
Sbjct: 216 QLTQTSDDSLFPSFT 230
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 41.5 bits (93), Expect = 4e-04
Identities = 44/148 (29%), Positives = 74/148 (50%), Gaps = 9/148 (6%)
Frame = +1
Query: 64 IALVLAPTRELAQQIQQVAS----EFGNSSY-VRNTCVFGGAPKREQARDLERGVEIVIA 228
I+L+L P L +Q+ ++ + E GN V C G P +R +I+++
Sbjct: 164 ISLILCPNVMLCEQVVRMVNGLVDEDGNPLLRVEAVCGSQGWP--------DRLPDIIVS 215
Query: 229 TPGRLIDFLE-KGTTNLQ--RCT-YLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWS 396
TP L++ +E K L+ RC Y+V DEAD +L F+ QI ++I+ +R D
Sbjct: 216 TPAALLNNIEPKRNRRLEFLRCVKYVVFDEADMLLCGSFQNQIIRLINMLRFDE------ 269
Query: 397 ATWPKEVRKLAEDYLGDYVQINIGSLQL 480
K+V +LA+ LG ++I+ Q+
Sbjct: 270 ----KQVSRLAKSNLGRPMEIDASVPQI 293
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 39.5 bits (88), Expect = 0.002
Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 14/178 (7%)
Frame = +1
Query: 67 ALVLAPTRELAQQIQQVASEFGNSSY--VRNTCVF----GGAPKREQARDLERGVEIVIA 228
A+++ PTREL Q+ +VA S V+ V GG +R ++ I++A
Sbjct: 147 AVIVVPTRELGMQVTKVARMLAAKSEIDVKGCTVMALLDGGTLRRHKSWLKAEPPAILVA 206
Query: 229 TPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE-PQIRKIIDQIR--PDRQTLMWSA 399
T L LEK + LV+DE D + + +RK++ RQT+ SA
Sbjct: 207 TVASLCHMLEKHIFRIDSVRVLVVDEVDFLFYSSKQVGSVRKLLTSFSSCDKRQTVFASA 266
Query: 400 TWPKEVRKLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEH-----EKENKLNVLL 558
+ P+ + + + + ++ + +SA + + +C H EK NK VLL
Sbjct: 267 SIPQHKHFVHDCIQQKWTKRDVVHVHVSA----IMPMPLCLLHRFVMCEKTNKHQVLL 320
>At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein
contains Pfam profile PF00098: Zinc knuckle
Length = 200
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +1
Query: 361 QIRPDRQTLMWSATWPKEVRKLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKEN 540
+I + Q + + P+++ K D GDY+ +G ++ A IL ++D + E EN
Sbjct: 27 EIFDEDQAIYLMISLPEQIEKF--DGRGDYI---LGKTKILARFEILDVIDALKIEEDEN 81
Query: 541 K 543
K
Sbjct: 82 K 82
>At1g15820.1 68414.m01898 chlorophyll A-B binding protein,
chloroplast (LHCB6) nearly identical to Lhcb6 protein
[Arabidopsis thaliana] GI:4741960; contains Pfam profile
PF00504: Chlorophyll A-B binding protein
Length = 258
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 313 RMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLGD 447
++L MG+ + ++ +D PD Q++ W+ W K A +Y GD
Sbjct: 149 QLLLMGWV-ESKRWVDFFNPDSQSVEWATPWSKTAENFA-NYTGD 191
>At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 315
Score = 29.1 bits (62), Expect = 2.1
Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 8/139 (5%)
Frame = +1
Query: 166 GGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE-PQ 342
GG +R ++ I++AT L LEK + LV+DE D + +
Sbjct: 29 GGTLRRHKSWLKAEPPAILVATVASLCHMLEKHIFRIDSVRVLVVDEVDFLFYSSKQVGS 88
Query: 343 IRKIIDQIR--PDRQTLMWSATWPKEVRKLAEDYLGDYVQINIGSLQLSANHNILQIVDV 516
+RK++ RQT+ SA+ P+ + + + + ++ + +SA + + +
Sbjct: 89 VRKLLTSFSSCDKRQTVFASASIPQHKHFVHDCIQQKWTKRDVVHVHVSA----IMPMPL 144
Query: 517 CQEH-----EKENKLNVLL 558
C H EK NK VLL
Sbjct: 145 CLLHRFVMCEKTNKHQVLL 163
>At3g60970.1 68416.m06823 ABC transporter family protein ABC
transporter-like proteins
Length = 1037
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 262 GTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDR 378
G L++ LVLDEA +D + I+KII+Q DR
Sbjct: 934 GRVLLKKSNILVLDEATASVDSATDGVIQKIINQEFKDR 972
>At3g60160.1 68416.m06717 ABC transporter family protein similar to
ATP-binding cassette transporter MRP8 GI:18031899 from
[Arabidopsis thaliana]
Length = 1490
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 262 GTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDR 378
G L++ LVLDEA +D + I+KII+Q DR
Sbjct: 1387 GRVLLKKSNILVLDEATASVDSATDGVIQKIINQEFKDR 1425
>At5g27300.1 68418.m03260 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 510
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 235 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 345
GR++DF+ T + C DEA R+L+M E Q+
Sbjct: 308 GRVVDFISYRTLVDESCRKGKYDEATRLLEMLREKQL 344
>At2g27800.1 68415.m03370 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 427
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 235 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 345
GR++DF+ T + C DEA R+L+M E Q+
Sbjct: 374 GRVVDFISYRTLVDESCRKGKYDEATRLLEMLREKQL 410
>At4g13400.1 68417.m02093 expressed protein
Length = 319
Score = 27.1 bits (57), Expect = 8.7
Identities = 21/64 (32%), Positives = 30/64 (46%)
Frame = +1
Query: 43 IRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIV 222
I+ G I V+ E+A QI + S +S Y+ T AP+ E+AR LER +
Sbjct: 252 IQTRSGQIVKVVYGEDEIAYQIGETTSIL-SSGYLCATPHCVRAPQGEEARGLERSTFAL 310
Query: 223 IATP 234
P
Sbjct: 311 FMQP 314
>At3g21130.1 68416.m02670 F-box family protein contains Pfam
profile: PF00646 F-box domain
Length = 367
Score = 27.1 bits (57), Expect = 8.7
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +2
Query: 20 YILIISLPFGVVMVLLH*F*LQQENLLNKYSRLLQNLAIHLMFVIHVCLEVPLKENRPVI 199
Y++ +SL +G+ V L Q +L + S L+ + I +F L K+NR V+
Sbjct: 69 YLMNVSLQYGIEKVDLSAKLTGQFSLKDPLSNSLEEVDIRNVFHCDGLLLCSTKDNRLVV 128
Query: 200 W 202
W
Sbjct: 129 W 129
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,511,555
Number of Sequences: 28952
Number of extensions: 256690
Number of successful extensions: 742
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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