Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_L23
         (455 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g44340.1 68416.m04764 sec23/sec24 transport family protein co...    33   0.12 
At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transfera...    30   0.85 
At5g23720.2 68418.m02781 dual specificity protein phosphatase fa...    29   2.0  
At5g23720.1 68418.m02780 dual specificity protein phosphatase fa...    29   2.0  
At5g14540.1 68418.m01704 proline-rich family protein contains pr...    28   2.6  
At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family...    28   2.6  
At1g79480.1 68414.m09263 hypothetical protein low similarity to ...    28   3.4  
At5g48920.1 68418.m06052 hydroxyproline-rich glycoprotein family...    27   6.0  
At1g13290.1 68414.m01543 zinc finger (C2H2 type) family protein ...    27   6.0  
At5g32590.1 68418.m03867 myosin heavy chain-related similar to M...    27   7.9  
At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ...    27   7.9  
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein...    27   7.9  
At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) / chlorop...    27   7.9  

>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
           contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
           PF04815: Sec23/Sec24 helical domain and PF04810:
           Sec23/Sec24 zinc finger
          Length = 1096

 Score = 32.7 bits (71), Expect = 0.12
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
 Frame = +1

Query: 100 PDYNPGQVPSDGN-SDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRY 276
           P   PG  P     +   ++A P P+   P+ GP     P+S+ PA       N+P   Y
Sbjct: 227 PMMGPGAFPRGSQFTSGPMMAPPPPYGQPPNAGPFTGNSPLSSPPAHSIPPPTNFPGVPY 286

Query: 277 DNPLARGG 300
             P   GG
Sbjct: 287 GRPPMPGG 294


>At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 456

 Score = 29.9 bits (64), Expect = 0.85
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 5   SDTIRQ*KLSCFSSSPYWPWLPQTECTWSIITLII-IQA 118
           S  I + + SC  SSP+ PW+P    + +I   I+ IQA
Sbjct: 96  SKIIEEKRYSCIISSPFTPWVPAVAASHNISCAILWIQA 134


>At5g23720.2 68418.m02781 dual specificity protein phosphatase
           family protein contains Pfam profile: PF00782 dual
           specificity phosphatase, catalytic domain; contains TG
           acceptor splice site at intron 9
          Length = 845

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 82  HVVDHNPDYNPGQVPSDGNSDH 147
           H V+H P  +  +VPSD +SDH
Sbjct: 470 HEVNHYPSPSKDRVPSDNSSDH 491


>At5g23720.1 68418.m02780 dual specificity protein phosphatase
           family protein contains Pfam profile: PF00782 dual
           specificity phosphatase, catalytic domain; contains TG
           acceptor splice site at intron 9
          Length = 929

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 82  HVVDHNPDYNPGQVPSDGNSDH 147
           H V+H P  +  +VPSD +SDH
Sbjct: 554 HEVNHYPSPSKDRVPSDNSSDH 575


>At5g14540.1 68418.m01704 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 547

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +1

Query: 163 PDPFFSQPSNGPSG--NYEPISTGPAFVDFNHPNYPPKRYDNPLAR 294
           P P  S P N P    ++ P  + P+   +N P  PP  YD P  R
Sbjct: 357 PYPQQSYPPNPPRQPPSHPPPGSAPSQQYYNAPPTPPSMYDGPGGR 402


>At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family
           protein
          Length = 421

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +1

Query: 100 PDYNPGQVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGP 231
           P ++   +PS          NP+P++S P + P+ +    S+ P
Sbjct: 296 PSFSESSLPSTSPHYPSHYQNPEPYYSSPHSAPAPSSTSFSSAP 339



 Score = 27.5 bits (58), Expect = 4.5
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 184 PSNGPSGNYEPISTGPAFVDFNHP-NYPPKRYDNP 285
           PS+ PS ++ P  TGP+   + HP ++ P   D P
Sbjct: 236 PSSYPSNDHLPPPTGPSDSPYPHPYSHQPYHQDPP 270


>At1g79480.1 68414.m09263 hypothetical protein low similarity to
           beta-1,3-glucanase-like protein GI:9758115 from
           [Arabidopsis thaliana]
          Length = 356

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
 Frame = +1

Query: 97  NPDYNPGQVPSDGN-SDHVVIANPDPFFSQPSNGP--SGNYEPISTGPAFVDFNHPNYPP 267
           NP+ NP    S  N +  V + NP    S P N P  S N  P  T P   + + PN PP
Sbjct: 146 NPNSNPNPPESSSNPNPPVTVPNPPESSSNP-NPPESSSNPNPPITIPYPPESSSPN-PP 203

Query: 268 KRYDNPLARG 297
           +   +P   G
Sbjct: 204 EIVPSPPESG 213


>At5g48920.1 68418.m06052 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 205

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
 Frame = +1

Query: 88  VDHNPDYNPGQ----VPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHP 255
           V++ P Y+P      +PS        I+ P P FS P + P  ++ P    P    + HP
Sbjct: 5   VEYFPYYSPPSHQHPLPSPVPPPPSHISPPPPPFSPPHHPPPPHFSPPHQPPP-SPYPHP 63

Query: 256 N-YPPKRYDNP 285
           +  PP  Y +P
Sbjct: 64  HPPPPSPYPHP 74


>At1g13290.1 68414.m01543 zinc finger (C2H2 type) family protein
           contains Pfam domian PF00096: Zinc finger, C2H2 type
          Length = 302

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +1

Query: 106 YNPGQVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAF-VDFNHP 255
           YN  Q    G+ D VV++   P    PS+      +P ST P+   +FNHP
Sbjct: 2   YNNNQYSFSGDEDSVVLSLGPPGQQYPSHN-----KPTSTKPSSDHEFNHP 47


>At5g32590.1 68418.m03867 myosin heavy chain-related similar to
           Myosin heavy chain, non-muscle (Zipper protein) (Myosin
           II)(SP:Q99323) {Drosophila melanogaster}
          Length = 761

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
 Frame = +1

Query: 112 PGQVPSDGNSDHVVIANPDPFFS-----QPSNGPSGNYEPISTGP 231
           P ++P   NS+ VVI + D   S     QP+ G SG  + ++  P
Sbjct: 704 PPELPPSANSEKVVIEDDDGSDSGVPSEQPTTGESGENKTVAADP 748


>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
            subunit (RPB205) (RPII) (RPB1) nearly identical to
            P|P18616 DNA-directed RNA polymerase II largest subunit
            (EC 2.7.7.6) {Arabidopsis thaliana}
          Length = 1840

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 20/76 (26%), Positives = 28/76 (36%)
 Frame = +1

Query: 97   NPDYNPGQVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRY 276
            +P Y+P       +S     ++P    + P   PS  Y P  T P +   +   Y P   
Sbjct: 1764 SPSYSPTSPSYSPSSPTYSPSSPYSSGASPDYSPSAGYSP--TLPGYSPSSTGQYTPHEG 1821

Query: 277  DNPLARGGK*MSHKDK 324
            D     G K  S  DK
Sbjct: 1822 DKKDKTGKKDASKDDK 1837


>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 372

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +1

Query: 97  NPDYNPGQVPSDGNSDHVVIANPDPFFSQPSNGPSGNYE 213
           NP Y PGQ+ S  +S           +S+   G S N +
Sbjct: 289 NPKYEPGQMKSSSSSGECYKCGKQGHWSRDCTGQSSNQQ 327


>At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) /
           chlorophyll b synthase identical to chlorophyll a
           oxygenase GI:5853117 from [Arabidopsis thaliana];
           contains Pfam PF00355 Rieske [2Fe-2S] domain
          Length = 511

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -3

Query: 345 FLLVLKSLIFMRHLLPTTGERVVVSLGWIIGMIEIDERRSSAYGFIIS 202
           F  +LK+L FM HL     E+V V   WI  +    +    +Y F IS
Sbjct: 462 FAPILKNLPFMEHLWRHFAEQVKVHHKWIDHLQPSSQSCFLSYRFYIS 509


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,754,025
Number of Sequences: 28952
Number of extensions: 174952
Number of successful extensions: 505
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)