Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_L22
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5...    28   0.91 
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    27   1.6  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    27   2.1  
SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa...    27   2.1  
SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa...    27   2.8  
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    26   3.7  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    26   4.9  
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc...    25   6.4  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    25   6.4  
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    25   8.5  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    25   8.5  

>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
           Taf72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 643

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +3

Query: 378 KATNLGITDSSIWQMFFC-PVHGLFIATYKPDEKSFLYKNGQIEPITELADTRTRLIAVG 554
           K+T++  +D S+  +    PV+G    T+ PD K  L  +          DT+T L+A  
Sbjct: 362 KSTSVEDSDGSVRLLSHSGPVYG---TTFSPDNKYLLSCSEDASARLWSVDTKTALVAYK 418

Query: 555 EHHDIIFANSSGVFGY 602
            H   ++  + G FG+
Sbjct: 419 GHTGPVWDVAFGPFGH 434


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +3

Query: 288 NGMANAVDSIDHKVYLGGKDGVYTYDYTTKKATNLGITD-SSIWQMFFCPVHGLFIATYK 464
           +G  ++  S +HK+  G    V  +D  T K     +TD + IW + F  +    +A  +
Sbjct: 629 SGYISSFVSDEHKIISGNDGSVKLWDVRTGKLLRFLLTDLTKIWHVDFDAMR--CVAAVQ 686

Query: 465 PDEKSFL 485
            D++++L
Sbjct: 687 RDDQAYL 693


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 354 YTYDYTTKKATNLGITDSSIWQMFFCPV-HGLFIATYKPDEKSFLY 488
           + Y+ +T++  +L  TDS +W+  F P   G+ +   + D    +Y
Sbjct: 439 WNYEKSTEEPEHLITTDSPVWKARFTPFGDGVILMPQRGDNSVHMY 484


>SPBC12C2.04 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +3

Query: 93  IVIRNNNYEKQV-LKSDVHNPYQLAIDYQTSTIFFSLSPEVNGKTVLKSAYFNTKTNEYG 269
           I+++  NY+  + L++D H  Y   +D+      +  SPE + + ++     +   NE+ 
Sbjct: 292 IILQGTNYDTCLELQADGH--YVRMVDFYGQPRLYIRSPEADSERIINFPEDDPYYNEFD 349

Query: 270 EIAGITNG 293
              G+  G
Sbjct: 350 AFLGVVQG 357


>SPBC21C3.18 |spo4||serine/threonine protein kinase
           Spo4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +3

Query: 87  DVIVIRNNNYEKQVLKSDVHNPYQLAIDYQTSTIFFSLSPEVNGKTVLKSAYFN 248
           D+I     N E  +L++       LAID     +    S  V  KT L+  +FN
Sbjct: 351 DLIASITKNDENLILETSSDYQVALAIDLLDKLLELHPSKRVKAKTALQHEFFN 404


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -3

Query: 601 YPNTPDELAKII--SWCSPTAINLVLVSANSVIGSICPFLYRKD 476
           YP TP  + +++  +  S   +N V++  + ++G+   +L RKD
Sbjct: 172 YPCTPKGIMELLKDNKISVAGLNAVVLGRSDIVGNPISYLLRKD 215


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
 Frame = +1

Query: 241 TSIQKQMN--MEKSPESQMAWLTLWTVSTTKFISEAKMEFTRTITLPRKLQT*VSQTLAY 414
           T I++  N  +E S E  +     W  ST  F S+ +  F+  +TL  K  T       +
Sbjct: 661 TKIEELANSDVEPSTEQNIGGDVSWGAST--FQSKPQPSFSFGLTLDDKSNTPGKNFSIF 718

Query: 415 GKCFSAQFMDFSLQHTNLTKNLSYTRTGK 501
           GK    Q      ++  LTK  S+  + K
Sbjct: 719 GKTAETQVEQKKPENNVLTKPFSFAPSDK 747


>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 21/65 (32%), Positives = 28/65 (43%)
 Frame = +1

Query: 88  TLS*FGTTIMKNKFSRATCTILTN*QSTTRPAQYFSVYLPK*TVKLF*NPLTSIQKQMNM 267
           T+  F  T+MKNKF            ST    Q FS +L K   +L  +   S   Q ++
Sbjct: 291 TILPFSVTLMKNKFGNFLIQKCFE-YSTEAQLQSFSYFLKKHVKELSIDAFGSHVLQKSL 349

Query: 268 EKSPE 282
           E  PE
Sbjct: 350 EIYPE 354


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/45 (28%), Positives = 27/45 (60%)
 Frame = +3

Query: 156 QLAIDYQTSTIFFSLSPEVNGKTVLKSAYFNTKTNEYGEIAGITN 290
           ++++ Y ++ +F  ++ ++N   VLK  + NT+ NEY +   I N
Sbjct: 256 RMSLYYDSNELFKKMTDDLN--YVLKFPFDNTRGNEYEKEQKIRN 298


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
           Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 155 VRIVHVALENLFFIIVVPNYDNVTFLLISAFRE 57
           VR+   AL N F    VPNYD+V  +  + FR+
Sbjct: 290 VRLARPALINAFG---VPNYDSVVPMYTTVFRD 319


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/51 (23%), Positives = 29/51 (56%)
 Frame = +3

Query: 225  VLKSAYFNTKTNEYGEIAGITNGMANAVDSIDHKVYLGGKDGVYTYDYTTK 377
            V +  Y  ++TN+   + G++  +ANA D  +   +L  +DG++ + ++ +
Sbjct: 1278 VSRMNYVASQTNKKVRVLGLSTAVANANDLAN---WLNIRDGLFNFRHSVR 1325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,548,792
Number of Sequences: 5004
Number of extensions: 53522
Number of successful extensions: 158
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)