Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_L22
         (603 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical pr...    30   1.5  
U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z78415-6|CAH60758.1|  291|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U64853-5|AAB04978.2|  460|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AL032618-1|CAB63366.1| 1045|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z99710-6|CAB16869.1|  362|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical
           protein R08E3.1b protein.
          Length = 1465

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +3

Query: 93  IVIRNNNYEKQVLKSDVHNPYQLAIDYQTSTIFFSLSPEVNGKTVLKSAYFNTKTNEYGE 272
           +++  N  +  V+KS V N ++       ++IF+ LSP VN     + A F    N+  E
Sbjct: 107 VILAENTKDTDVMKSSVDNVFR-----NKNSIFYQLSPFVNSAPPQRYANFFAVLNKCSE 161

Query: 273 IA 278
            A
Sbjct: 162 TA 163


>U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical
           protein R08E3.1a protein.
          Length = 1512

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +3

Query: 93  IVIRNNNYEKQVLKSDVHNPYQLAIDYQTSTIFFSLSPEVNGKTVLKSAYFNTKTNEYGE 272
           +++  N  +  V+KS V N ++       ++IF+ LSP VN     + A F    N+  E
Sbjct: 107 VILAENTKDTDVMKSSVDNVFR-----NKNSIFYQLSPFVNSAPPQRYANFFAVLNKCSE 161

Query: 273 IA 278
            A
Sbjct: 162 TA 163


>Z78415-6|CAH60758.1|  291|Caenorhabditis elegans Hypothetical
           protein C17G1.8 protein.
          Length = 291

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 30/126 (23%), Positives = 47/126 (37%)
 Frame = +3

Query: 120 KQVLKSDVHNPYQLAIDYQTSTIFFSLSPEVNGKTVLKSAYFNTKTNEYGEIAGITNGMA 299
           K +L S +     L + +  + I  SL  E   + + KS   N  T       G    ++
Sbjct: 75  KSLLYSYIGFVILLILVHGIARITGSLHKEEAKENLRKSMLHNINTTAVVTKIGREIKLS 134

Query: 300 NAVDSIDHKVYLGGKDGVYTYDYTTKKATNLGITDSSIWQMFFCPVHGLFIATYKPDEKS 479
              D +  ++   G D    + Y+     NL   DS      F   +G       PDE+S
Sbjct: 135 LTWDHLQRELQCCGVDNYTDWHYSVHWPNNLYTPDSCCDPQHFDAENGTENCGKLPDEQS 194

Query: 480 FLYKNG 497
            LY+ G
Sbjct: 195 LLYQKG 200


>U64853-5|AAB04978.2|  460|Caenorhabditis elegans Hypothetical
           protein K11G9.5 protein.
          Length = 460

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = -2

Query: 380 FLGSVIVRVNSIFASEINFVVDTVHSVSHAICDSGDFS-IFICFCIEVSGF*NSFTVH 210
           F  ++ V +  +    + F+  ++H VS  +     FS IF C C+ V+GF    T+H
Sbjct: 320 FFNTISVGLVGVLLGCLGFIPQSLHYVSVVL-----FSVIFSCLCLNVAGFYKCATLH 372


>AL032618-1|CAB63366.1| 1045|Caenorhabditis elegans Hypothetical
            protein Y42A5A.1 protein.
          Length = 1045

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = +3

Query: 3    QSNLLLEMKYLIFVWLFVFAEGGDKK--KCDVIVIRNNNYEKQVLKSD-VHNPY 155
            ++N +L++ Y   V+L  F +   K       ++ R  NYE++VLK+D V  PY
Sbjct: 947  KNNFILDLLYEDKVYLKEFVDKDRKSLFALQQLLYRKINYEEEVLKADEVFKPY 1000


>Z99710-6|CAB16869.1|  362|Caenorhabditis elegans Hypothetical
           protein F08A8.6 protein.
          Length = 362

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 122 TSSQERRAQSLPISNRLPDQHNIFQFISRSER*NCSKIRLLQYK 253
           T ++E R +     NRL + H  FQ + R    N  +++ L+Y+
Sbjct: 292 TPAEEARTRIEHYENRLKEMHGEFQHVRREADENREEVQRLRYE 335


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,011,554
Number of Sequences: 27780
Number of extensions: 296721
Number of successful extensions: 734
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)