Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_L20
(272 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 30 0.051
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 26 0.83
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 26 1.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 1.5
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe... 25 2.5
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 2.5
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces... 24 3.4
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 24 3.4
SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease Pac1|S... 24 3.4
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 24 3.4
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 24 3.4
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 24 4.4
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 23 5.9
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 23 7.8
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p... 23 7.8
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 23 7.8
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc... 23 7.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 23 7.8
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 30.3 bits (65), Expect = 0.051
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 94 NSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPI 201
N V DG + VVI P F+ P+N S N+ P+
Sbjct: 402 NHSVTGDGEAKQVVITMPSTHFT-PANNSSANHSPL 436
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 26.2 bits (55), Expect = 0.83
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +1
Query: 127 HVVIANPDPFFSQPSNGPSGNY-EPISTGPAF-VDFNHPNYPPKRYDNP 267
HV ++NPD P + S NY P+ A +F+ P + +Y +P
Sbjct: 478 HVSLSNPDFAIGSPMSQDSSNYSSPLHRRKASDSNFSDPRFDDLKYLSP 526
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 25.8 bits (54), Expect = 1.1
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Frame = +1
Query: 154 FFSQPSNGP----SGNYEPISTGPAFVDF 228
F + P+N P SG+Y PI P F F
Sbjct: 1560 FVTPPTNSPYAEVSGDYNPIHVSPTFAAF 1588
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 1.5
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +1
Query: 160 SQPSNGPSGNYEPISTGPAFVDFNHPNYPP 249
S P N P P+S PA + P PP
Sbjct: 265 SSPPNSPPRPIAPVSMNPAINSTSKPPLPP 294
>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 659
Score = 24.6 bits (51), Expect = 2.5
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = -2
Query: 118 CRPMEHHYCPPRELCLRQP 62
C P H+C LCL+ P
Sbjct: 25 CSPQTSHWCKYPALCLKSP 43
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 24.6 bits (51), Expect = 2.5
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Frame = +1
Query: 184 GNYEPI--STGPAFVDFNHPNYPPKRY 258
G+Y P ST P + +P+YPP Y
Sbjct: 117 GSYPPTQPSTQPLPQSYGYPSYPPAGY 143
>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 24.2 bits (50), Expect = 3.4
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +1
Query: 154 FFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRY 258
+ +Q GPS NY + V+ +PNY + Y
Sbjct: 151 YIAQLVGGPSINYSTAAMLLGAVNIGNPNYEVQNY 185
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 24.2 bits (50), Expect = 3.4
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +1
Query: 109 SDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAF 219
SD DH V + P F S+ P + E S P F
Sbjct: 1443 SDVEDDHDVAKSTAPDFETSSHRPERSSEKKSPSPVF 1479
>SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease
Pac1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 24.2 bits (50), Expect = 3.4
Identities = 9/34 (26%), Positives = 14/34 (41%)
Frame = +1
Query: 148 DPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPP 249
+P +PS+ P + P +F YPP
Sbjct: 99 EPVIEEPSSHPKNQKNQENNEPTSEEFEEGEYPP 132
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 24.2 bits (50), Expect = 3.4
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -1
Query: 149 SGFAITTWSLLPSDGTPLL 93
S F + W++LP G P+L
Sbjct: 899 SCFVLRIWNMLPETGVPIL 917
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 24.2 bits (50), Expect = 3.4
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +3
Query: 129 RCYCEPGSFLLSTIKRS*RKL*THKHWTGVRR 224
+C EP S STI+ HW G+R+
Sbjct: 444 KCLTEPTSRFQSTIEIQKHPFFKRLHWNGLRK 475
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 23.8 bits (49), Expect = 4.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 106 PSDGNSDHVVIANPDPFFSQPSNGP 180
P+ GN D+ + P +SQPS P
Sbjct: 85 PAVGNQDYSKPSYSQPSYSQPSQPP 109
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 23.4 bits (48), Expect = 5.9
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Frame = +1
Query: 91 DNSGVPSDGNSDHVVIANPDPF--FSQPSNGPSGNYEPISTGPAFVDFNHPNYP 246
DN +P D ++++ + P +P S P+F+D N P+ P
Sbjct: 278 DNMQLPPDAPERSLLVSKQKNITKLNNEKRIPPQLAQPTSHVPSFIDTNSPSMP 331
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 23.0 bits (47), Expect = 7.8
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1
Query: 73 NRVHVVDNSGVPSDGNSDHVVIANPDPFFSQPS 171
NR+ V NS N ++ IAN P F Q S
Sbjct: 306 NRISQVPNSDYSIYSNFNNFPIANHAPSFPQSS 338
>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 752
Score = 23.0 bits (47), Expect = 7.8
Identities = 7/21 (33%), Positives = 15/21 (71%)
Frame = +1
Query: 118 NSDHVVIANPDPFFSQPSNGP 180
N D++ ++ DP +++PS+ P
Sbjct: 467 NGDNIEFSHFDPLYTRPSSHP 487
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 23.0 bits (47), Expect = 7.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 160 SQPSNGPSGNYEPISTGPAFVDFNHPNYPP 249
++ SN P+GN EP ST A V + + P
Sbjct: 97 ARSSNSPAGNLEP-STNNAGVHMTNASMNP 125
>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 23.0 bits (47), Expect = 7.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 130 VVIANPDPFFSQPSNGPSGNYEPIS 204
V+I + FF + S G NY+PI+
Sbjct: 388 VLILHLKRFFYEASGGTQKNYKPIA 412
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 23.0 bits (47), Expect = 7.8
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +1
Query: 106 PSDGNSDHVVIANPDPFFSQPSNGPSGNYE 195
P+D NS +V P + P+ P +YE
Sbjct: 844 PADFNSLNVDFYEPHSYLESPAPEPQPSYE 873
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,133,819
Number of Sequences: 5004
Number of extensions: 21020
Number of successful extensions: 68
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 59659786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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