Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_L20
(272 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44915| Best HMM Match : VWA (HMM E-Value=0) 27 2.4
SB_13163| Best HMM Match : VWA (HMM E-Value=2.3e-32) 27 2.4
SB_39378| Best HMM Match : VWA (HMM E-Value=0) 27 2.4
SB_8894| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.1
SB_7134| Best HMM Match : HMG_box (HMM E-Value=2e-16) 27 3.1
SB_4940| Best HMM Match : DUF755 (HMM E-Value=2.3) 27 3.1
SB_49511| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.1
SB_20719| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.1
SB_3457| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.1
SB_42291| Best HMM Match : Tyrosinase (HMM E-Value=0.0014) 26 5.4
SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.2
SB_48207| Best HMM Match : Peptidase_C5 (HMM E-Value=0.33) 25 7.2
SB_43972| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.2
SB_30667| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.2
SB_15993| Best HMM Match : RVT_1 (HMM E-Value=7.2e-12) 25 7.2
SB_54002| Best HMM Match : POP1 (HMM E-Value=0) 25 7.2
SB_42815| Best HMM Match : rve (HMM E-Value=0.00022) 25 7.2
SB_10450| Best HMM Match : Peptidase_C5 (HMM E-Value=1.1) 25 7.2
SB_55050| Best HMM Match : Alpha_L_fucos (HMM E-Value=2.4e-18) 25 9.5
SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06) 25 9.5
SB_31713| Best HMM Match : PSP1 (HMM E-Value=4.4) 25 9.5
SB_31260| Best HMM Match : rve (HMM E-Value=5.2e-25) 25 9.5
>SB_44915| Best HMM Match : VWA (HMM E-Value=0)
Length = 541
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +1
Query: 133 VIANPDPFFSQP-SNGPSGNYEPISTG 210
VIA PDP S+P +NG G PIS+G
Sbjct: 258 VIAEPDPCLSKPCANG--GTCSPISSG 282
>SB_13163| Best HMM Match : VWA (HMM E-Value=2.3e-32)
Length = 318
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +1
Query: 133 VIANPDPFFSQP-SNGPSGNYEPISTG 210
VIA PDP S+P +NG G PIS+G
Sbjct: 54 VIAEPDPCLSKPCANG--GTCSPISSG 78
>SB_39378| Best HMM Match : VWA (HMM E-Value=0)
Length = 2865
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +1
Query: 133 VIANPDPFFSQP-SNGPSGNYEPISTG 210
VIA PDP S+P +NG G PIS+G
Sbjct: 409 VIAEPDPCLSKPCANG--GTCSPISSG 433
>SB_8894| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 26.6 bits (56), Expect = 3.1
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 220 VDFNHPNYPPKRYD 261
VD NHPNY P+ Y+
Sbjct: 32 VDLNHPNYLPETYN 45
>SB_7134| Best HMM Match : HMG_box (HMM E-Value=2e-16)
Length = 228
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 88 VDNSGVPSDGNSDHVVIANPDPFFSQ 165
VD+SGV D S +V A +P FSQ
Sbjct: 161 VDSSGVAGDQRSSLLVSATLNPLFSQ 186
>SB_4940| Best HMM Match : DUF755 (HMM E-Value=2.3)
Length = 173
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 117 AVRWNTTIVHHVNSVCGSHGQY 52
A RW T H+ +CG HG+Y
Sbjct: 55 ATRWTTN--HNCYHICGHHGRY 74
>SB_49511| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 88 VDNSGVPSDGNSDHVVIANPDPFFSQ 165
VD+SGV D S +V A +P FSQ
Sbjct: 90 VDSSGVAGDQRSSLLVSATLNPLFSQ 115
>SB_20719| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +1
Query: 103 VPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRY 258
+P DGN IAN D PSN P ++ + A V+ +PP Y
Sbjct: 87 IPEDGNGCAAYIANVD-----PSNKPGSHWLAVYFTYANVNGESFRFPPHAY 133
>SB_3457| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 848
Score = 26.6 bits (56), Expect = 3.1
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -2
Query: 127 GHYCRPMEHHYCPPRELCLR 68
GH C+P CPP C+R
Sbjct: 805 GHQCQPDTCDSCPPNSHCMR 824
>SB_42291| Best HMM Match : Tyrosinase (HMM E-Value=0.0014)
Length = 406
Score = 25.8 bits (54), Expect = 5.4
Identities = 8/23 (34%), Positives = 11/23 (47%)
Frame = +2
Query: 29 LSCFSSSPYWPWLPQTEFTWWTI 97
+ C + PYW W Q W T+
Sbjct: 216 IDCRVTIPYWQWTAQAGHLWRTL 238
>SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 799
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +1
Query: 103 VPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVD-FNHPNYPPKRY 258
+P DGN D I N D PS+ P ++ + P + ++ +PP Y
Sbjct: 33 IPEDGNGDAAYIVNVD-----PSDKPGSHWLAVYFTPDHCEWWDSFGFPPSAY 80
>SB_48207| Best HMM Match : Peptidase_C5 (HMM E-Value=0.33)
Length = 184
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +1
Query: 103 VPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVD-FNHPNYPPKRY 258
+P DGN D I N D PS+ P ++ + P + ++ +PP Y
Sbjct: 33 IPEDGNGDAAYIVNVD-----PSDKPGSHWLAVYFTPDHCEWWDSFGFPPSAY 80
>SB_43972| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 899
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = +1
Query: 178 PSGNYEPISTGPAFV-DFN--HPNYPPKR 255
PS + P+STG +FV D N P PP+R
Sbjct: 843 PSAGFTPLSTGLSFVFDENIPPPPVPPRR 871
>SB_30667| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 108
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +1
Query: 103 VPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVD-FNHPNYPPKRY 258
+P DGN D I N D PS+ P ++ + P + ++ +PP Y
Sbjct: 33 IPEDGNGDAAYIVNVD-----PSDKPGSHWLAVYFTPDHCEWWDSFGFPPSAY 80
>SB_15993| Best HMM Match : RVT_1 (HMM E-Value=7.2e-12)
Length = 769
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 205 TGPAFVDFNHPNYPPKR 255
T AF D +PN+PP+R
Sbjct: 114 TNEAFFDLLNPNFPPER 130
>SB_54002| Best HMM Match : POP1 (HMM E-Value=0)
Length = 886
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 88 VDNSGVPSDGNSDHVVIANPDPFFSQPSNG 177
VDN D NSD V + + F ++PS G
Sbjct: 375 VDNKPSKKDSNSDRVKVDSDFEFVAKPSCG 404
>SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)
Length = 1514
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +1
Query: 103 VPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVD-FNHPNYPPKRY 258
+P DGN D I N D PS+ P ++ + P + ++ +PP Y
Sbjct: 1217 IPEDGNGDAAYIVNVD-----PSDKPGSHWLAVYFTPDHCEWWDSFGFPPSAY 1264
>SB_10450| Best HMM Match : Peptidase_C5 (HMM E-Value=1.1)
Length = 245
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +1
Query: 103 VPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVD-FNHPNYPPKRY 258
+P DGN D I N D PS+ P ++ + P + ++ +PP Y
Sbjct: 33 IPEDGNGDAAYIVNVD-----PSDKPGSHWLAVYFTPDHCEWWDSFGFPPSAY 80
>SB_55050| Best HMM Match : Alpha_L_fucos (HMM E-Value=2.4e-18)
Length = 203
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Frame = +1
Query: 151 PFFSQPSNGPSGNY---EPISTGPAFVDFNHPNYPP 249
P F S G +G + PAFV+F NYPP
Sbjct: 58 PSFGAESGGTAGEWFWRYWHDGNPAFVNFMKKNYPP 93
>SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Frame = +1
Query: 100 GVPSDGNSDHVVIA-NPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDNP 267
G P+D +H + PF P P P P + F PN+PP + P
Sbjct: 252 GGPTDQRRNHEGDPYHGGPFNQAPPGFPPRWGPPPHMPPDYRGFPPPNFPPPDFSRP 308
>SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)
Length = 454
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Frame = +1
Query: 112 DGNSDHVVIANPDPFFSQPSNGPSGN--YEPISTGPAFVDFN-HPNYPPK 252
D H ++ + + Q +GN Y I VD N HP YPPK
Sbjct: 41 DNTIFHRIVKGGENIYGQSGFKVTGNTIYNMIKMADMEVDDNDHPLYPPK 90
>SB_31713| Best HMM Match : PSP1 (HMM E-Value=4.4)
Length = 159
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 172 NGPSGNYEPISTGPAFVDFNHPNYPP 249
NGP Y P++ GP + N P YPP
Sbjct: 24 NGPV--YPPVN-GPVYPPVNKPVYPP 46
>SB_31260| Best HMM Match : rve (HMM E-Value=5.2e-25)
Length = 1962
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +1
Query: 103 VPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVD-FNHPNYPPKRY 258
+P DGN D I N D PS+ P ++ + P + ++ +PP Y
Sbjct: 1811 IPEDGNGDAAYIVNLD-----PSDKPGSHWLAVYFTPDHCEWWDSFGFPPSAY 1858
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,831,397
Number of Sequences: 59808
Number of extensions: 178966
Number of successful extensions: 500
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 16,821,457
effective HSP length: 67
effective length of database: 12,814,321
effective search space used: 294729383
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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