Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_L19
         (466 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    27   1.9  
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch...    25   5.7  
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    25   5.7  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   7.5  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    25   7.5  
SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S...    25   7.5  
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    25   7.5  
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar...    24   9.9  
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos...    24   9.9  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    24   9.9  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    24   9.9  

>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 19/74 (25%), Positives = 34/74 (45%)
 Frame = +3

Query: 189 EVINFKKLNSQEVYQAGNNCYRLNLSSEQSIVMGTYKNSTGKIVNLLYYGKGEVKSLYRS 368
           E+I+FK++NS+       + + L + S++      Y +S   IV L    + ++K     
Sbjct: 101 EMIDFKQINSEFFLSHRQHGFVLFIDSKKKPRQSFYTDSATSIVQLSKKYRNKIKFKSVD 160

Query: 369 CDRIISKYLFIKIN 410
           C   + K   I IN
Sbjct: 161 CASSLEKCEEIGIN 174


>SPCC1020.09 |||WD repeat protein, human WDR79
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 399

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 243 NCYRLNLSSEQSIVMGTYKNSTG 311
           +C+ LN    +++ +GTY N  G
Sbjct: 213 SCFSLNPMDSKTLAVGTYSNRVG 235


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
 Frame = +3

Query: 237 GNNCYRLNLSSEQSIVMGTYKNSTGKI--VNLLYYGKGEVKSLYR--SCDRIISKYLFIK 404
           G    RL + +++SI+M  +    GKI  +N  + G  + K L    + D++  K   + 
Sbjct: 395 GMELARLTVVAKESIIMDVFIKPKGKILSLNTRFSGIHDAKELESGITMDQMYIKIKELG 454

Query: 405 INENYVL 425
           +N+N +L
Sbjct: 455 MNKNTIL 461


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 298 LYVPITIDCSDDKFR 254
           LY+   IDCS+D+FR
Sbjct: 276 LYMKRNIDCSEDEFR 290


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 102 DEIYDLNGLLGTTYAVYFWPPNQRQREDCEVINFKK 209
           DE   LN +L  +   YF   +++ R  C +++FK+
Sbjct: 618 DENQSLNNILVASLKFYFNLLHRKVRNGCALLHFKE 653


>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
           Sad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +3

Query: 60  IRNNEELCLDYYKNDEIYDLNGLLGTTYAVYFWPPNQRQREDCEVINFK 206
           +    E  +D   +DE Y LN     T A + +P NQR     +  + K
Sbjct: 119 VNEEYENSIDEESDDEGYSLNEDTTATNASFRYPMNQRSTRKSQFYSSK 167


>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +3

Query: 141 YAVYFWPPNQRQREDC-EVIN-FKKLNSQEVYQAGNNCYRLNLSSEQSIV 284
           YA  F P  +   E C E++  +K+L   +   AG N YR+ +   +S++
Sbjct: 658 YARTFKP--KLNTESCAEIVKKYKQLRMDDAQGAGKNSYRITVRQLESMI 705


>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
           Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 768

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = +3

Query: 177 REDCEVINFKKLNSQEVYQAGNNCYRLNLSSEQSIVMGTYKNSTGKIVNLLYYGKGEVKS 356
           ++ CE +  K L   + +   +   R  L  ++  + G   +S   IV   YYGKG+  S
Sbjct: 564 KDSCEGLMVKMLEGPDSHYEPSKRSRHWLKVKKDYLSGV-GDSLDLIVIGAYYGKGKRTS 622

Query: 357 LY 362
           +Y
Sbjct: 623 VY 624


>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
           5-trisphosphate3-phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +3

Query: 306 TGKIVNLLYYGKGEVKSLYRSCDRIISKYLFIKINENYVL 425
           T K++ +     G +  LYR+ +  + KYL  ++ +N++L
Sbjct: 33  TSKVIAMSTPAAG-IHKLYRNDELDVFKYLTTQLKDNWIL 71


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 430 IPST*FSLIFINRYFDIIRSQD 365
           I ST F+ IF+N Y  +I S D
Sbjct: 510 IDSTFFTTIFLNTYASMISSSD 531


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 6   KMCVQLLALVYLFCNVNCIRNNEE 77
           +MC +   L+ L+ N +CI  N E
Sbjct: 519 RMCEEPQTLIELYLNYDCISGNTE 542


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,911,770
Number of Sequences: 5004
Number of extensions: 38678
Number of successful extensions: 102
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)