Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_L19
         (466 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0577 + 22461831-22462023,22462378-22463160,22463380-224649...    28   3.2  
02_01_0705 - 5259949-5263887,5266207-5266509                           27   5.6  
07_01_0695 + 5251802-5253016                                           27   7.4  
05_03_0679 + 16879370-16879400,16879586-16879716,16880178-168802...    27   7.4  

>06_03_0577 +
           22461831-22462023,22462378-22463160,22463380-22464936,
           22465082-22465449
          Length = 966

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +3

Query: 243 NCYRLN-LSSEQSIVMGTYKNSTGKIVNLLYYG 338
           N Y L+ L   ++++ GT  +S GK++NL+Y G
Sbjct: 218 NIYGLHSLRLTENMLTGTIPSSLGKLINLVYIG 250


>02_01_0705 - 5259949-5263887,5266207-5266509
          Length = 1413

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -3

Query: 350  HFSFTIIK*IDNFPSTILVCTHNNRLLG*QI*TITVIASLIYL 222
            HFS ++ + I NF     +  HNN L G     I  + SL YL
Sbjct: 906  HFSGSLDESISNFTKLTYLDLHNNSLTGRLPSAIARVTSLYYL 948


>07_01_0695 + 5251802-5253016
          Length = 404

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 20/57 (35%), Positives = 26/57 (45%)
 Frame = +3

Query: 114 DLNGLLGTTYAVYFWPPNQRQREDCEVINFKKLNSQEVYQAGNNCYRLNLSSEQSIV 284
           DLNG L   +AVY  P +     D E   + K  S +     NN Y L L  ++ IV
Sbjct: 302 DLNGSLVMVHAVYGSPMDLWFLSDLEQGLWVKKYSIDFEYYNNNAYPLLLLDDEKIV 358


>05_03_0679 +
           16879370-16879400,16879586-16879716,16880178-16880255,
           16880582-16880626,16880727-16880765,16881260-16881356,
           16881528-16881937
          Length = 276

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +3

Query: 237 GNNCYRLNLSSEQSIVMGTYKNSTGKIVNLLYYGKGEVKSLYRSCDRIISKYLFIK 404
           GN+C+ L++SS  SI M     S   ++ +L  G   ++  +   D +I   L  K
Sbjct: 175 GNHCFELSISSTFSIEMSL---SAITLLGMLNLGHSAIRVAFHDTDCLICSVLAAK 227


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,584,096
Number of Sequences: 37544
Number of extensions: 218780
Number of successful extensions: 442
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)