Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_L19
(466 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36597| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07) 33 0.12
SB_2260| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.62
SB_54614| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-38) 30 0.82
SB_5124| Best HMM Match : VWD (HMM E-Value=0.0096) 28 3.3
SB_58896| Best HMM Match : Fibrinogen_C (HMM E-Value=0) 28 4.4
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_58407| Best HMM Match : TNFR_c6 (HMM E-Value=3.5e-05) 28 4.4
SB_40832| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.8
>SB_36597| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
Length = 346
Score = 33.1 bits (72), Expect = 0.12
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +3
Query: 54 NCIRNNEELCLDYYKNDEIY--DLNGLLGTTYAVYFWPPNQRQREDC 188
N I N+ + C +YY Y D++ LL T+YA ++ NQR DC
Sbjct: 242 NRIFNSIKRCYEYYHGYASYSQDVHMLLATSYASNWFTENQRNNFDC 288
>SB_2260| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 502
Score = 30.7 bits (66), Expect = 0.62
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -3
Query: 458 HTTSTRRTVNTEHIILVNLYKQVLRYNSITRPVKALHFSFT 336
H T T+RT++ H VL Y TR + LH+++T
Sbjct: 130 HYTHTKRTLHVLHYTHTKPALHVLHYTHNTRALHVLHYTYT 170
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -3
Query: 458 HTTSTRRTVNTEHIILVNLYKQVLRYNSITRPVKALHFSFT 336
H T T+RT++ H VL Y R + LH++ T
Sbjct: 287 HYTHTKRTLHVLHYTHTKRALHVLHYTHTKRALHELHYTHT 327
>SB_54614| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-38)
Length = 1935
Score = 30.3 bits (65), Expect = 0.82
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +3
Query: 273 QSIVMGTYKNSTGKIVNLLYYGKGEVKSLYRSCDRIISKYLFIKINE 413
+S++ ++S+ ++ L+ Y KG+VK L RSC + ++K E
Sbjct: 486 ESLIESKTQSSSARLYYLVRYTKGQVKVLVRSCLAMPDSVGYLKARE 532
>SB_5124| Best HMM Match : VWD (HMM E-Value=0.0096)
Length = 264
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +3
Query: 210 LNSQEVYQAGNNC--YRLNLSSEQSIVMGTYKNSTGKIVNLL 329
+ + E Y NNC Y N+S+ Q +G ST I+N L
Sbjct: 189 ITALEQYTPTNNCDGYAFNISARQEYRVGNRSGSTKDIINEL 230
>SB_58896| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
Length = 352
Score = 27.9 bits (59), Expect = 4.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 45 CNVNCIRNNEELCLDYYKNDEIYDLNGLLGTTY 143
CNV C + + L ++Y+K + DLN T Y
Sbjct: 86 CNVKCDEDEKCLSVNYWKLENKCDLNNATKTMY 118
>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5834
Score = 27.9 bits (59), Expect = 4.4
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +3
Query: 222 EVYQAGNNC--YRLNLSSEQSIVMGTYKNSTGKIVNLL 329
E Y NNC Y N+S+ Q +G ST I+N L
Sbjct: 3842 EQYTPTNNCDGYAFNISARQEYRVGNRSGSTKDIINEL 3879
>SB_58407| Best HMM Match : TNFR_c6 (HMM E-Value=3.5e-05)
Length = 511
Score = 27.9 bits (59), Expect = 4.4
Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
Frame = +3
Query: 159 PPNQRQREDCEVINFKKLNSQEVYQAGNNCY-RLNLSSEQSIV--MGTYKNSTGKIVNL- 326
P NQ ED N + +E C R SS IV G + I ++
Sbjct: 356 PCNQGSAEDVLPANQPNEDVEEPGSTMPGCSERSETSSVTEIVENQGNESPTASPIGSVP 415
Query: 327 LYYGKGEVKSLYRSCDRIISKYLFIKINENY 419
L Y KG + + CD++ KY F+KI +Y
Sbjct: 416 LEYIKGCLPLYQKVCDKLDLKYRFMKIGRHY 446
>SB_40832| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1496
Score = 27.5 bits (58), Expect = 5.8
Identities = 20/69 (28%), Positives = 34/69 (49%)
Frame = +3
Query: 246 CYRLNLSSEQSIVMGTYKNSTGKIVNLLYYGKGEVKSLYRSCDRIISKYLFIKINENYVL 425
C N++ + TY N G+++NL G+ E + + DR+I+ LFI + +
Sbjct: 694 CVATNIAGRDEGI--TYLNIGGRMINLFIAGQDEGITYLNTSDRMIN--LFIAGQDEGIT 749
Query: 426 GINCSSGGR 452
+N GGR
Sbjct: 750 YLNI--GGR 756
Score = 27.5 bits (58), Expect = 5.8
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +3
Query: 291 TYKNSTGKIVNLLYYGKGEVKSLYRSCDRIISKYLFIKINENYVLGINCSSGGR 452
TY N G+++NL G+ E + + DR+I+ LFI + + +N GGR
Sbjct: 854 TYLNIGGRMINLFIAGRDEGITYLNTSDRMIN--LFIAGRDEGITYLNI--GGR 903
Score = 27.1 bits (57), Expect = 7.7
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +3
Query: 291 TYKNSTGKIVNLLYYGKGEVKSLYRSCDRIISKYLFIKINENYVLGINCSSGGR 452
TY N G+++NL G+ E + + DR+I+ LFI + + +N GGR
Sbjct: 812 TYLNIGGRMINLFIAGQDEGITYLNTSDRMIN--LFIAGRDEGITYLNI--GGR 861
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,036,210
Number of Sequences: 59808
Number of extensions: 274902
Number of successful extensions: 708
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 957531822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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