Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_L19
         (466 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16230.1 68417.m02463 GDSL-motif lipase/hydrolase family prot...    32   0.17 
At1g56680.1 68414.m06519 glycoside hydrolase family 19 protein s...    29   1.5  
At5g40990.1 68418.m04983 GDSL-motif lipase/hydrolase family prot...    27   6.2  

>At4g16230.1 68417.m02463 GDSL-motif lipase/hydrolase family protein
           similar to SP|P40602 Anther-specific proline-rich
           protein APG precursor {Arabidopsis thaliana}; contains
           Pfam profile PF00657: GDSL-like Lipase/Acylhydrolase
          Length = 340

 Score = 32.3 bits (70), Expect = 0.17
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
 Frame = +3

Query: 234 AGNNCYRLNLSSEQSIVMGT-YKNSTGKIVNLLYYGKGEVKSLYRSC--DRIISKYLFIK 404
           AGNN Y   LS    +  G  + + TG+  N    G+  V  +Y++   D +   YL   
Sbjct: 41  AGNNNYLATLSKANYVPNGIDFGSPTGRFTN----GRTIVDIVYQALGSDELTPPYLAPT 96

Query: 405 INENYVL-GINCSSGGRGVL 461
            + + +L G+N +SGG G+L
Sbjct: 97  TSGSLILNGVNYASGGSGIL 116


>At1g56680.1 68414.m06519 glycoside hydrolase family 19 protein
           similar to basic endochitinase CHB4 precursor SP:Q06209
           from [Brassica napus]
          Length = 280

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +3

Query: 216 SQEVYQAGNNCYRLNLSSEQSIVMG-TYKNSTGKIVNLLYYGKGEVKSL 359
           +Q  Y++GN CY+  ++SE       TY   +GK     YYG+G ++S+
Sbjct: 139 AQFSYESGNFCYKEEVTSETYCSSSKTYPCQSGK----KYYGRGLLQSI 183


>At5g40990.1 68418.m04983 GDSL-motif lipase/hydrolase family protein
           similar to lipase [Arabidopsis thaliana] GI:1145627;
           contains Pfam profile PF00657: Lipase/Acylhydrolase with
           GDSL-like motif
          Length = 374

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
 Frame = +3

Query: 225 VYQAGNNCYRLNLSSEQSIV----MGTYKNSTGKIVNLLYYGKGEVKSLYRSCDRIISKY 392
           V+ AGNN Y   LSS +S        T+K+ TG++ +       +  + Y     I    
Sbjct: 45  VFDAGNNNYIDTLSSVRSNYWPYGQTTFKSPTGRVSDGRLIP--DFIAEYAWLPLIPPNL 102

Query: 393 LFIKINENYVLGINCSSGGRGVLI 464
                N  +  G+N +SGG G L+
Sbjct: 103 QPFNGNSQFAYGVNFASGGAGALV 126


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,712,300
Number of Sequences: 28952
Number of extensions: 191761
Number of successful extensions: 411
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 782033640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)