Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_L16
         (552 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    27   1.8  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    26   3.2  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    25   5.6  
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    25   9.8  
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l...    25   9.8  
SPCP31B10.04 |||conserved fungal protein|Schizosaccharomyces pom...    25   9.8  

>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = +3

Query: 75  WFHIRLLRVAAHCHL-KCTDVLLNAYKITTARTARYAVQTDVTQNRAQTPHNMQELVVTI 251
           W  +R       C + +C  +++N     + +TA   V  D+T       H++ + V+  
Sbjct: 221 WMLVRHTATTICCDIMRCLCLIVNKLSEKSNQTAEILVLRDLTSRFIDMIHDICDSVLFS 280

Query: 252 NIHNLAALVFTVAM 293
            IH++ A +  V +
Sbjct: 281 RIHDIRASIRIVCV 294


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 233 LHVVWCLCTI-LCYIRLNSISCRSCSRNLVRI*EYIRTL 120
           LH ++C+C I LC  + NSI     S  +V + E  R L
Sbjct: 4   LHSIFCVCLILLCIFKENSIVGAINSARMVELRETSRRL 42


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 337 KKDEMYSGLVQIYYTFAGSRDRWHHCISAILVI 435
           K  E +SG +Q Y  FAGS   W + +  I +I
Sbjct: 67  KNAERHSGEIQAYAKFAGS--TWTYYVKKIRII 97


>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = -1

Query: 333 AESCLHTSNGLHLTLPQ*TPVPPDCEYLSLPPAPACCVVSVHDFVLHP 190
           A + +H +   ++ +   TP P + +    P  P    +    FVLHP
Sbjct: 407 AAAAVHNNANSYMPITP-TPYPNNAKIFGYPNQPPLTPIPFTGFVLHP 453


>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
           ligase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 788

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/41 (31%), Positives = 16/41 (39%)
 Frame = +2

Query: 185 SNGCNTKSCTDTTQHAGAGGNDKYSQSGGTGVYCGNVKCSP 307
           S+G   +S      H  A   DK   +GG G Y      SP
Sbjct: 207 SDGYTCRSLPPAQDHKRAFDGDKGPNTGGMGCYAPTPVASP 247


>SPCP31B10.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 287

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 17  RKFKMGSVTMFLSVFTVLMMVSYTTAAGSCPLPSKV 124
           RK+K+    ++  V  +LM+VSY   +G      KV
Sbjct: 96  RKYKVSWDPLYFGVDNLLMVVSYLNDSGLIAATKKV 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,462,884
Number of Sequences: 5004
Number of extensions: 52876
Number of successful extensions: 118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)