Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_L16
(552 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0360 - 24684159-24684565,24684654-24685089 32 0.35
02_04_0413 + 22681957-22682035,22682253-22682788 30 1.4
12_02_0547 - 20291895-20292043,20292339-20293164 29 1.9
04_01_0377 - 4970034-4970687 29 3.3
03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230... 28 4.3
02_05_0184 + 26543156-26544019 28 4.3
01_03_0069 + 12192220-12192252,12192457-12192612,12193246-12193404 28 4.3
08_02_0551 - 18535219-18536134,18536140-18536345 28 5.7
12_01_0708 - 6137865-6140909 27 7.5
09_04_0209 - 15638246-15639214 27 7.5
07_03_1144 + 24331104-24331292,24331387-24331611,24332133-243325... 27 7.5
02_02_0202 - 7742137-7744636,7744760-7744973,7745755-7745797 27 7.5
10_05_0042 + 8481227-8481764,8482291-8482418,8483349-8483933,848... 27 10.0
08_01_0684 + 6009474-6009582,6009715-6009904,6011412-6011483,601... 27 10.0
04_04_0358 - 24668212-24668475 27 10.0
04_03_0286 + 13915705-13915984,13916478-13917062,13918188-139186... 27 10.0
03_02_0827 + 11582974-11583027,11583210-11584358 27 10.0
>04_04_0360 - 24684159-24684565,24684654-24685089
Length = 280
Score = 31.9 bits (69), Expect = 0.35
Identities = 16/50 (32%), Positives = 20/50 (40%)
Frame = +2
Query: 161 CKNGKICCSNGCNTKSCTDTTQHAGAGGNDKYSQSGGTGVYCGNVKCSPF 310
C GK C +GC + C G GG GG+GV +V F
Sbjct: 38 CGTGKDYCGDGCRSGPCYGGGGGGGGGGGGGGGGGGGSGVSVESVVTEAF 87
>02_04_0413 + 22681957-22682035,22682253-22682788
Length = 204
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +2
Query: 104 CPLPSKVYGCTPKCVQDYDCKNGKICCSNGCNTKSC 211
CP P CV C++ CC NGC+ C
Sbjct: 89 CPRPPHPPPSPSPCVHPPCCESAAGCCCNGCSGGGC 124
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/54 (25%), Positives = 20/54 (37%)
Frame = +2
Query: 92 AAGSCPLPSKVYGCTPKCVQDYDCKNGKICCSNGCNTKSCTDTTQHAGAGGNDK 253
+ G CP P C +C C++ C +GC K C G G +
Sbjct: 152 SGGECPPPPSP-PCQHECPPTPPCEHPP-CSESGCCDKGCNSCCNRCGEYGQSR 203
>12_02_0547 - 20291895-20292043,20292339-20293164
Length = 324
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 173 KICCSNGCNTKSCTDTTQHAGAGGNDKYSQSGGTG 277
++C + G + C +T + A GN+ Y Q GG G
Sbjct: 224 EVCGNTGHSGNDCPETHEEAMFMGNNGYRQQGGQG 258
>04_01_0377 - 4970034-4970687
Length = 217
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Frame = +2
Query: 143 CVQDYDCKNGKICCSNGCNTKSCTDTTQHAGAGGNDKYSQS--GGTGVYCG 289
C Q C G C NGC + +C + G DK + G YCG
Sbjct: 122 CSQWGYCGLGSEFCGNGCQSGACCPEKRCGKQAGGDKCPNNFCCSAGGYCG 172
>03_02_0752 -
10922456-10922644,10922719-10922796,10922888-10923016,
10923105-10923152,10923243-10923333,10923517-10923648,
10923869-10924086,10925121-10925271,10925360-10926009,
10926715-10926786,10926938-10926985,10927105-10927242,
10927750-10927756,10928064-10928212
Length = 699
Score = 28.3 bits (60), Expect = 4.3
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Frame = +2
Query: 128 GCTPKCVQDYDCKNGKICCSNGCN-TKSCTDTTQHAGAGGNDKYSQSGGTGVYCGNVKCS 304
GC C +D C CC C +KSC + + G +S + + +C
Sbjct: 455 GCQQMCGKDCACVENGTCCEKYCGCSKSCKN--RFRGCHCAKSQCRSRQCPCFAASRECD 512
Query: 305 PFEVCK 322
P +VC+
Sbjct: 513 P-DVCR 517
>02_05_0184 + 26543156-26544019
Length = 287
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +2
Query: 182 CSNGCNTKSCTDTTQHAGAGGNDKYSQSGGTGVYCGNVK 298
C G ++ +T AGA G ++ S GG G G K
Sbjct: 51 CGGGQGQEAAVETDADAGAAGEEESSSCGGAGAGEGERK 89
>01_03_0069 + 12192220-12192252,12192457-12192612,12193246-12193404
Length = 115
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 107 PLPSKVYGCTPKCVQDYDCKNGKICCSNGCNTKSCTD 217
P P +GC P C + C+ + C +GC +C D
Sbjct: 8 PTPKPTHGCLPFCFRGRPCRKPR-CVFSGC---ACAD 40
>08_02_0551 - 18535219-18536134,18536140-18536345
Length = 373
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -1
Query: 315 TSNGLHLTLPQ*TPVPPDCEYLSLPPAPACCVVSVHDFV 199
TS GL LP+ PP+ ++ +PP VV+V D +
Sbjct: 242 TSGGLQAVLPR----PPEERWVDVPPVAGALVVNVGDLL 276
>12_01_0708 - 6137865-6140909
Length = 1014
Score = 27.5 bits (58), Expect = 7.5
Identities = 17/64 (26%), Positives = 35/64 (54%)
Frame = +3
Query: 84 IRLLRVAAHCHLKCTDVLLNAYKITTARTARYAVQTDVTQNRAQTPHNMQELVVTINIHN 263
I+LLR+A+ ++L + ++ITT + +Q + Q +T M L++ I+ +N
Sbjct: 513 IKLLRLASCSISTFPNILKHLHEITTLDLSHNKIQGAIPQWAWETWRGMYFLLLNISHNN 572
Query: 264 LAAL 275
+ +L
Sbjct: 573 ITSL 576
>09_04_0209 - 15638246-15639214
Length = 322
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +2
Query: 173 KICCSNGCNTKSCTDTTQHAGAGGNDKYSQSGGTG 277
++C + G + C +T + A GN+ Y GG G
Sbjct: 174 EVCGNTGHSGNDCPETREEAMFMGNNGYRPQGGQG 208
>07_03_1144 +
24331104-24331292,24331387-24331611,24332133-24332521,
24332762-24332856,24333300-24333673
Length = 423
Score = 27.5 bits (58), Expect = 7.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 218 CLCTILCYIRLNSISCRSCSRNLVR 144
C T C R++S++CR CS +R
Sbjct: 377 CRYTARCLCRISSLTCRRCSTRRLR 401
>02_02_0202 - 7742137-7744636,7744760-7744973,7745755-7745797
Length = 918
Score = 27.5 bits (58), Expect = 7.5
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = -1
Query: 327 SCLHTSNGLHLTLPQ*TPV---PPDCEYLSLPPAPACCVVSVHDFVLHPFEQHI 175
S LH+ L + TP PP ++LP P C VS++ F + P ++H+
Sbjct: 43 SALHSFVPLSVDCSPWTPADRRPPTQHNVNLPQLPECLQVSIYRFAMLP-KKHL 95
>10_05_0042 +
8481227-8481764,8482291-8482418,8483349-8483933,
8484033-8484061,8485221-8485612,8486038-8486454,
8486587-8486668,8487116-8487686
Length = 913
Score = 27.1 bits (57), Expect = 10.0
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +2
Query: 173 KICCSNGCNTKSCTDTTQHAGAGGNDKYSQSGGTG 277
++C G + C +T + A GN+ Y GG G
Sbjct: 36 EVCGGTGHSGNDCPETREEAMYMGNNGYRPQGGQG 70
>08_01_0684 +
6009474-6009582,6009715-6009904,6011412-6011483,
6011644-6011715,6011806-6011877,6012163-6012234,
6012283-6012354,6012479-6012550,6012634-6012705,
6013112-6013183,6013275-6013349,6013453-6013524,
6013619-6013684,6013752-6013777,6014179-6014558,
6014642-6014840,6014910-6015068,6015569-6015613,
6015742-6015973,6016053-6016203,6016306-6016665
Length = 879
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = -1
Query: 126 YTLDGNGQLPAAVVYETIISTVKTDKNMVTEPILNFL 16
Y L+ GQ+PA + T ++ + D+N ++ PI +F+
Sbjct: 103 YALNVVGQIPAELQNLTYLTYLNLDQNYLSGPIPSFI 139
>04_04_0358 - 24668212-24668475
Length = 87
Score = 27.1 bits (57), Expect = 10.0
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Frame = +2
Query: 41 TMFLSVFTVLMMVSYTTAAGSCPLPSKVYGCTPK--CVQDYDCKNGKICCSNGCNTKSCT 214
TM VF + +++S + P ++ GC C Q C + C GC + C
Sbjct: 3 TMVALVFGLALLLS-----AAAPAAAQNCGCQDGYCCSQWGYCGTTEAYCGQGCQSGPCW 57
Query: 215 DTTQHAGAGGNDKYSQSGGTGV 280
+ A AG + + +GG V
Sbjct: 58 GSGGEAAAGMAGRKAGAGGVEV 79
>04_03_0286 +
13915705-13915984,13916478-13917062,13918188-13918661,
13918963-13920208,13920282-13920297
Length = 866
Score = 27.1 bits (57), Expect = 10.0
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Frame = +2
Query: 32 GSVTMFLSVFTVLMMVSYTTAAGSCPLPSKVYGCTPKCVQ---DYDCKNGKICCSNGCNT 202
G + + L VFT+ ++ + S P + + GC C DY G CS +
Sbjct: 6 GLLPLLLIVFTMTPVIQASNRTTSLPSAATLAGCQRSCSNLTIDYPFGIGSSHCSRQPDF 65
Query: 203 K-SCTDTTQ 226
+ C +TTQ
Sbjct: 66 ELICNNTTQ 74
>03_02_0827 + 11582974-11583027,11583210-11584358
Length = 400
Score = 27.1 bits (57), Expect = 10.0
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 233 GAGGNDKYSQSGGTGVYCGNVKC-SPFEVCKQDSATRRMK 349
G GG ++ + GG G CG + SP +V K S+ R ++
Sbjct: 136 GGGGGERAGKHGGGGGGCGAQQHHSPAQVLKNFSSIRNLR 175
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,006,029
Number of Sequences: 37544
Number of extensions: 366522
Number of successful extensions: 1080
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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