Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_L15
         (400 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g34660.1 68415.m04258 glutathione S-conjugate ABC transporter...    29   1.5  
At1g70300.1 68414.m08088 potassium transporter, putative similar...    27   4.6  
At5g05800.1 68418.m00638 expressed protein                             26   8.0  
At2g34315.1 68415.m04200 disease resistance protein-related simi...    26   8.0  

>At2g34660.1 68415.m04258 glutathione S-conjugate ABC transporter
           (MRP2) almost identical to MgATP-energized glutathione
           S-conjugate pump GI:2909781 from [Arabidopsis thaliana]
          Length = 1623

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 224 RLWLKENNHSLTFLCIFSCLYNHIFCIIYTY 316
           R+WL   +H +   C+ S LYN+   ++  Y
Sbjct: 53  RIWLALKDHKVERFCLRSRLYNYFLALLAAY 83


>At1g70300.1 68414.m08088 potassium transporter, putative similar to
           potassium transporter HAK2p [Mesembryanthemum
           crystallinum] gi|14091471|gb|AAK53759; KUP/HAK/KT
           Transporter family member, PMID:11500563; contains Pfam
           profile PF02705: K+ potassium transporter
          Length = 782

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 64  FTKIILLVVACVFAMGTVSAAPWNP 138
           F  +ILL + C+ A+G  +   WNP
Sbjct: 224 FAPVILLWLMCISAIGVYNIFHWNP 248


>At5g05800.1 68418.m00638 expressed protein
          Length = 449

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +2

Query: 71  KLFCWLSLASSL-WGPFRRRRGIPSRNWRKLARE 169
           K++C L  ASS+ W P  R  G     WR   RE
Sbjct: 233 KIWCQLVGASSMKWDPESRSFGATEEEWRIYIRE 266


>At2g34315.1 68415.m04200 disease resistance protein-related similar
           to SP|P54120 AIG1 protein {Arabidopsis thaliana}
          Length = 246

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +2

Query: 245 NHSLTFLCIFSCLYNHIFCIIYT 313
           NH L   C+F C     FCI  T
Sbjct: 222 NHHLLLFCVFYCFCFFYFCIFPT 244


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,948,235
Number of Sequences: 28952
Number of extensions: 138321
Number of successful extensions: 297
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)