Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_L11
(588 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.70
SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0) 30 1.6
SB_7677| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_33543| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_30460| Best HMM Match : DSPc (HMM E-Value=2.5e-38) 28 6.5
SB_16427| Best HMM Match : Orn_Arg_deC_N (HMM E-Value=6.2e-29) 28 6.5
SB_58205| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_47642| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21) 27 8.6
>SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1778
Score = 31.1 bits (67), Expect = 0.70
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
Frame = +1
Query: 106 EDQPEQWANSRVRRQAGALTVNSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAA 285
+++P V+ + T+N + +K + GN + L A S N K G
Sbjct: 651 DNEPVTETIDSVKEEDSKATINCIRNNNTYIKQSVEGNNSFSLDASSS---ENVRKEGDK 707
Query: 286 TAGLAY-DNVNGHGATLT-KTHIPGFGDKMTAAGKVN 390
++Y DN+N A T + IPG K + KVN
Sbjct: 708 DVVISYSDNMNNSKAANTDQFGIPGSDSKTGSDSKVN 744
>SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0)
Length = 751
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = +1
Query: 322 GATLTKTHIPGFGDKMTAAGKVNLFHNDNHDFSAKAFATKNLPNIPQ-VPNFNTVGAG 492
G+T T IPG G + GK ++ N H S A P VP T GAG
Sbjct: 322 GSTTKTTKIPGPGKIHISTGKPSITDNTKHKTSPSADGKGGKGEEPTIVPEMTTQGAG 379
>SB_7677| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 497
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +2
Query: 47 SASTAGTCSLKSLVTTLNNMRISRSSGPTPGCAGKRVH*LSTQTAPQVLWSRYL*LETKI 226
SA+TA S+ + TL +S ++GPTP + ++ L+ + + L + + +
Sbjct: 113 SATTAQDSSVLDTLATLATATLSHNTGPTPSTSMQQATSLAGRISVTPLTLSQNTISSSL 172
Query: 227 TG-SVPLAP 250
+G S PL P
Sbjct: 173 SGLSTPLTP 181
>SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1506
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +1
Query: 355 FGDKMTAAGKVNLFH---NDNHDFSAKAFATKNLPNIPQVPNFNTV 483
FGDK A + FH ND D S + T+ + ++ +P + TV
Sbjct: 587 FGDKWIGANTIRAFHHTDNDGIDASENSNLTRIIFDLSTLPMYETV 632
>SB_33543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 838
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 65 TCSLKSLVTTLNNMRISRSSGPTPGC 142
T + K+++TTL MRI ++GP C
Sbjct: 654 TTTKKTIITTLTTMRICAANGPLIDC 679
>SB_30460| Best HMM Match : DSPc (HMM E-Value=2.5e-38)
Length = 550
Score = 27.9 bits (59), Expect = 6.5
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Frame = +1
Query: 187 GAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAGLAYDNVNGHGATLTKTHIPGFGDK 366
G V +T E +L ALG +T+ + T L++ N + A+ K+ I G
Sbjct: 401 GIYVGGAVTAMEEDQLVALG---VTHVLNAAQGTKRLSHVNTD---ASFYKSGIIFHGIP 454
Query: 367 MTAAG--KVNLFHNDNHDFSAKAFATKNLP 450
T K+N + ++ DF A A TKN P
Sbjct: 455 ATDVFMFKLNKYFDEAADFIASAVGTKNCP 484
>SB_16427| Best HMM Match : Orn_Arg_deC_N (HMM E-Value=6.2e-29)
Length = 251
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = +1
Query: 430 FATKNLPNIPQVPNFNTVGAGVDYMFKDKIGASATAG---HTDVFNRNDYSL 576
+A K L NI + F+ +GAG+D + + ++ TAG +F N SL
Sbjct: 46 YAVKALSNINILKLFHQLGAGLDTVSEQEVQLGLTAGVAPENIIFTPNGVSL 97
>SB_58205| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 153
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = +3
Query: 138 GAPASGCTNCQLRRHLRCYGQGTYNWKRKS 227
G PA N QL R RC TY W RKS
Sbjct: 73 GKPAYFAKNLQLDRK-RCLYPKTYTWDRKS 101
>SB_47642| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21)
Length = 1336
Score = 27.5 bits (58), Expect = 8.6
Identities = 22/87 (25%), Positives = 37/87 (42%)
Frame = +1
Query: 58 SRYVLVEEPGYYIEQYEDQPEQWANSRVRRQAGALTVNSDGTSGAMVKVPITGNENHRLS 237
+R + EP ++ EDQ E A+S +R +AG +D G + + T N NH
Sbjct: 1183 ARKAQINEPPSPLKVQEDQRETEAHSPIRTRAGREATCNDHLKGCVNQA--TCN-NHLKG 1239
Query: 238 ALGSVDLTNQMKLGAATAGLAYDNVNG 318
+ + +K G D++ G
Sbjct: 1240 CVNQATCNDHLK-GCVNQATCNDHLKG 1265
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.315 0.132 0.386
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,161,812
Number of Sequences: 59808
Number of extensions: 439646
Number of successful extensions: 1150
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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