Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_L11
         (588 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19130.1 68415.m02233 S-locus lectin protein kinase family pr...    29   3.0  
At4g22300.1 68417.m03225 phospholipase/carboxylesterase family p...    27   7.0  
At4g21440.1 68417.m03099 myb family transcription factor (MYB102...    27   9.3  

>At2g19130.1 68415.m02233 S-locus lectin protein kinase family
           protein contains Pfam domains PF00954: S-locus
           glycoprotein family, PF00069: Protein kinase domain and
           PF01453: Lectin (probable mannose binding)
          Length = 828

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
 Frame = +3

Query: 405 QPRFQCQSIRH*KPAKYSSSSELQHCRCRSGLHVQGQ-DWCICD 533
           QPR QCQ  R+       S      CRC  G     Q DW + D
Sbjct: 285 QPRQQCQVYRYCGSFGICSDKSEPFCRCPQGFRPMSQKDWDLKD 328


>At4g22300.1 68417.m03225 phospholipase/carboxylesterase family
           protein similar to acyl-protein thioesterase-1 [Homo
           sapiens] GI:9965372; contains Pfam profile PF02230:
           Phospholipase/Carboxylesterase family
          Length = 471

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 151 LAGAPWSWPTAPADPHIVQCSNQALQRA 68
           L+ A W +P+AP +P  V C+N A+ R+
Sbjct: 31  LSNASWLFPSAPFNP--VTCNNGAVMRS 56


>At4g21440.1 68417.m03099 myb family transcription factor (MYB102)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 350

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +2

Query: 17  PSYSSYQFFWSASTAGTCSLKSLVTTLNNMRISRSSGPT 133
           PSYS   F ++ S   T S     TTLN+  I+ SS  T
Sbjct: 285 PSYSDQSFNFANSVLNTPSSSPSPTTLNSSYINSSSCST 323


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.132    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,871,103
Number of Sequences: 28952
Number of extensions: 297096
Number of successful extensions: 782
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)