Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_L10
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    46   3e-06
SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|...    27   2.2  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    26   5.1  
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c...    25   6.7  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    25   6.7  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    25   8.8  

>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 46.4 bits (105), Expect = 3e-06
 Identities = 50/193 (25%), Positives = 94/193 (48%), Gaps = 20/193 (10%)
 Frame = +2

Query: 101 EDCLYIDVYTP-NVKPDKLLPVMFWIGSFGFTYTIDCIYDAKFINKQDV---------IF 250
           EDCL+++++ P   KP +  PV+++I   G+    + ++  +  + QD+         I 
Sbjct: 80  EDCLFLNIWVPAGEKPAEGWPVLYFIHG-GWLQVGNPLHYRQ-CDPQDLQADGSPAKFIL 137

Query: 251 AKCNFRLGPFGFLS----INDFGAPGNCGLKDVVLALKWIQRNISTFGGDPDNVTIFGNS 418
                RL  FGFL+    + +     N G  D  L L+W  ++I +FGG+ +N+ + G S
Sbjct: 138 VSPGHRLNLFGFLAGKELLEEDPKSSNFGFWDQRLGLEWTYKHIESFGGNKENIAVGGIS 197

Query: 419 SG--GVIVHLL--VLSPMATGLFHKSIIQS-ASALNNWSLTKNPFQPVMELAKLLDIK-K 580
           +G    +  L+     P A  +  ++++ S   ++   S+ ++  Q   ELA+   I  +
Sbjct: 198 AGSYSALFQLIYETYHPEANQIIKRALLLSNGLSVQPKSVEESQIQ-FNELAQKFGIPLE 256

Query: 581 TSQIEVVEDLRAM 619
            S  E +E LRA+
Sbjct: 257 LSSAEKLEKLRAI 269


>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
 Frame = +2

Query: 284 FLSINDFGAPGNCGLKDVV----LALKWIQRNISTFGGDPDNVTIFGNSSGGVI 433
           F+ + ++  P    L D V    L + WI  N   +  DP+ +   G  +G  +
Sbjct: 219 FVVVPNYAQPPKFPLSDAVEFVSLCVDWIVENAIYYDADPERIFFLGEDTGASV 272


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 410 GNSSGGVIVHLLVLSPMATGLFHKSIIQSASALNNWSL 523
           GN S  +++ L  +S M  G    +I Q  S+L NW L
Sbjct: 542 GNGSFNIMLSLKFVSSMKPGTELLTIKQPKSSLLNWGL 579


>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 489

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +2

Query: 62  PLSFSFTYETIGSEDCLYIDVYTPNVKPDKLLPVMFWIGSFGFTYTIDCIYDAKFINKQ 238
           P SF+ +  TI  +   +++ Y  +++   L  V+FW+  F   Y    I DAK + ++
Sbjct: 249 PASFA-SQSTIAWQS--HLNSYYFSLRTRSLNNVLFWVIQFFVPYLFTLILDAKALKRR 304


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
            Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
 Frame = -1

Query: 435  TITPPELFPNIVTLS-GSPPNVLMFL*IHFSANTTSFNPQLPGAPKSLIDR-KPKGPSLK 262
            T+  P L P +  +  G    V+    +    + T      P  P   I+  KPKGP+LK
Sbjct: 1102 TLKIPSLIPRLRAIHLGKGKIVIKKAPLKQITSKTKEKSTSPTPPSITINPIKPKGPTLK 1161

Query: 261  LHFANMTS 238
            +   N+ S
Sbjct: 1162 IKLTNLRS 1169


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 224 FINKQDVIFAKCNFRLGPFGFLSINDFGAPGN 319
           +I K+D++  + + R+  + F  +ND G P N
Sbjct: 765 YITKEDIVCLEIDDRVFHYKFAFLNDNGYPRN 796


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,767,963
Number of Sequences: 5004
Number of extensions: 62298
Number of successful extensions: 145
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)