Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_L10
(621 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0036 + 25786530-25786756,25788000-25788076,25788538-257886... 35 0.060
09_04_0411 + 17366559-17367497 34 0.079
06_03_1338 - 29440373-29440534,29440993-29441083,29441799-294419... 33 0.18
09_04_0414 - 17393780-17394826 32 0.42
09_04_0412 + 17369935-17370873 29 3.0
05_07_0228 - 28526885-28527046,28527151-28527241,28528315-285284... 28 5.2
10_08_0332 - 16843295-16843356,16843884-16846656 28 6.9
04_04_1130 - 31112318-31112623,31113131-31113280,31113613-31114251 28 6.9
>01_06_0036 +
25786530-25786756,25788000-25788076,25788538-25788625,
25788706-25788786,25788866-25788940,25789048-25789149,
25789589-25789726,25791559-25791585,25791696-25791786,
25792423-25792584
Length = 355
Score = 34.7 bits (76), Expect = 0.060
Identities = 17/68 (25%), Positives = 36/68 (52%)
Frame = +2
Query: 326 LKDVVLALKWIQRNISTFGGDPDNVTIFGNSSGGVIVHLLVLSPMATGLFHKSIIQSASA 505
+ D + ++ NI+++GGDP+ + + G S+G I A L +++ +S+
Sbjct: 194 VSDASQGISYVCNNIASYGGDPNRIYLVGQSAGAHIA--------ACALIEQAVKESSGQ 245
Query: 506 LNNWSLTK 529
+WS+T+
Sbjct: 246 SISWSVTQ 253
>09_04_0411 + 17366559-17367497
Length = 312
Score = 34.3 bits (75), Expect = 0.079
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 9/123 (7%)
Frame = +2
Query: 110 LYIDVYTPNVKPD---KLLPVMFWIGSFGFTYTIDCIYDAKFINKQDVIFAKCNFRLGPF 280
L++ V+ P V+ K LPV+ + GF I+ A + N + + A +
Sbjct: 55 LFVRVFLPKVQDQETGKKLPVLVYFHGGGFI--IESADSATYHNYLNSVAAAAGVLV--- 109
Query: 281 GFLSINDFGAPGN---CGLKDVVLALKWI---QRNISTFGGDPDNVTIFGNSSGGVIVHL 442
+S+N AP N G D AL+W Q + GD + V + G+S+GG IVH
Sbjct: 110 --VSVNYRLAPENPLPAGYDDSWAALQWAVSAQDDWIAEHGDTERVFVAGDSAGGNIVHE 167
Query: 443 LVL 451
++L
Sbjct: 168 MLL 170
>06_03_1338 -
29440373-29440534,29440993-29441083,29441799-29441942,
29442094-29442159,29442589-29442729,29443077-29443178,
29443264-29443338,29443469-29443549,29443670-29443739,
29444063-29444139,29444392-29444660
Length = 425
Score = 33.1 bits (72), Expect = 0.18
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +2
Query: 326 LKDVVLALKWIQRNISTFGGDPDNVTIFGNSSGGVIVHLLVLSPMATGLFHKSIIQSASA 505
++D + ++ NI+++GGDP+ + + G S+G I A L H++I +S
Sbjct: 202 VEDASQGIAFVCNNIASYGGDPERIYLVGQSAGAHIA--------ACTLLHQAIKESGEG 253
Query: 506 -LNNWSLTK 529
+ WS+ +
Sbjct: 254 DASTWSIAQ 262
>09_04_0414 - 17393780-17394826
Length = 348
Score = 31.9 bits (69), Expect = 0.42
Identities = 39/152 (25%), Positives = 64/152 (42%), Gaps = 14/152 (9%)
Frame = +2
Query: 122 VYTPNVKPDKLLPVMFWI--GSFGFTYTIDCIYDAKFIN----KQDVIFAKCNFRLGPFG 283
+Y P+ + +PV+ + G+F IY A ++N K V+ N+RL P
Sbjct: 91 LYLPSFRATAKVPVLLYFHGGAFVVESAFTPIYHA-YLNTLAAKAGVLAVSVNYRLAP-- 147
Query: 284 FLSINDFGAPGNCGLKDVVLALKWIQRN--------ISTFGGDPDNVTIFGNSSGGVIVH 439
P D ALKW+ N +S +G D + + G+S+GG I H
Sbjct: 148 -------EHPLPAAYDDSWAALKWVLANAAPGTDQWVSQYG-DLSRLFLAGDSAGGNIAH 199
Query: 440 LLVLSPMATGLFHKSIIQSASALNNWSLTKNP 535
L L GL + I+ + L+ + ++P
Sbjct: 200 NLALRAGEEGLDGGARIKGVALLDPYFQGRSP 231
>09_04_0412 + 17369935-17370873
Length = 312
Score = 29.1 bits (62), Expect = 3.0
Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 12/126 (9%)
Frame = +2
Query: 110 LYIDVYTPNVKPDKL---LPVMFWIGSFGFTY-TIDCIYDAKFINKQ----DVIFAKCNF 265
L++ V+ P V+ +L LPV+ + GF + D ++N V+ ++
Sbjct: 55 LFVRVFLPKVQDQELGKKLPVLVYFHGGGFIIESADSATYHNYLNSAAAAAGVLVVSVDY 114
Query: 266 RLGPFGFLSINDFGAPGNCGLKDVVLALKW-IQRNIS---TFGGDPDNVTIFGNSSGGVI 433
RL P P G D AL+W + + T GD V + G+S+GG I
Sbjct: 115 RLAPEN---------PLPAGYDDSWAALQWAVSAHADDWITEHGDTARVFVAGDSAGGNI 165
Query: 434 VHLLVL 451
VH ++L
Sbjct: 166 VHDVLL 171
>05_07_0228 -
28526885-28527046,28527151-28527241,28528315-28528455,
28528560-28528625,28529180-28529317,28529759-28529860,
28530156-28530236,28530314-28530383,28530598-28530674,
28531035-28531483
Length = 458
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/46 (23%), Positives = 22/46 (47%)
Frame = +2
Query: 326 LKDVVLALKWIQRNISTFGGDPDNVTIFGNSSGGVIVHLLVLSPMA 463
+ D + ++ + +GGDP+ + + G S+G I +L A
Sbjct: 237 VSDASDGISFVCETVGAYGGDPNQIYLMGQSAGAHIAACALLEQAA 282
>10_08_0332 - 16843295-16843356,16843884-16846656
Length = 944
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 354 HFSANTTSFNPQLPGAPKSLIDRKPKGPS 268
+F+A ++ F P++P PK R+PK S
Sbjct: 810 YFNAESSPFQPEVPQVPKPHRRREPKNQS 838
>04_04_1130 - 31112318-31112623,31113131-31113280,31113613-31114251
Length = 364
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +2
Query: 380 GGDPDNVTIFGNSSGGVIVHLLVLSPMATGLFHKSIIQSASALNNWSLTKN 532
GGD + G S V +V+ +A G +H+S + A ++N ++ K+
Sbjct: 114 GGDRNPFPFAGLVSMSAAVSTMVVDSLAAGYYHRSQFRKARPVDNINVHKH 164
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,891,170
Number of Sequences: 37544
Number of extensions: 365017
Number of successful extensions: 767
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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