Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_L10
(621 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g15860.2 68418.m01856 expressed protein 40 0.002
At5g15860.1 68418.m01855 expressed protein 40 0.002
At3g02410.1 68416.m00228 hypothetical protein weak similarity to... 40 0.002
At1g26120.1 68414.m03188 esterase-related contains similaity to ... 36 0.016
At5g23530.1 68418.m02761 expressed protein contains similarity t... 34 0.087
At4g14570.1 68417.m02243 acylaminoacyl-peptidase-related similar... 32 0.35
At3g05120.1 68416.m00556 expressed protein low similarity to PrM... 31 0.81
At5g63700.1 68418.m07996 zinc finger (C3HC4 type RING finger) fa... 29 2.5
At5g27320.1 68418.m03262 expressed protein similar to PrMC3 [Pin... 29 2.5
At2g34830.1 68415.m04276 WRKY family transcription factor 29 3.3
>At5g15860.2 68418.m01856 expressed protein
Length = 299
Score = 39.5 bits (88), Expect = 0.002
Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 2/133 (1%)
Frame = +2
Query: 116 IDVYTPNVKPDKLLPVMFWI--GSFGFTYTIDCIYDAKFINKQDVIFAKCNFRLGPFGFL 289
+D+Y P+ D L PV+ ++ G++ Y + ++D+I A ++R P G
Sbjct: 143 LDLYLPS-NNDGLKPVVVFVTGGAWIIGYKAWGSLLGMQLAERDIIVACLDYRNFPQG-- 199
Query: 290 SINDFGAPGNCGLKDVVLALKWIQRNISTFGGDPDNVTIFGNSSGGVIVHLLVLSPMATG 469
+I+D + D + ++ NIS FGGDP+ + + G S+G I +L
Sbjct: 200 TISDM-------VTDASQGISFVCNNISAFGGDPNRIYLMGQSAGAHIAACALLEQATKE 252
Query: 470 LFHKSIIQSASAL 508
L +SI + S +
Sbjct: 253 LKGESISWTVSQI 265
>At5g15860.1 68418.m01855 expressed protein
Length = 427
Score = 39.5 bits (88), Expect = 0.002
Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 2/133 (1%)
Frame = +2
Query: 116 IDVYTPNVKPDKLLPVMFWI--GSFGFTYTIDCIYDAKFINKQDVIFAKCNFRLGPFGFL 289
+D+Y P+ D L PV+ ++ G++ Y + ++D+I A ++R P G
Sbjct: 143 LDLYLPS-NNDGLKPVVVFVTGGAWIIGYKAWGSLLGMQLAERDIIVACLDYRNFPQG-- 199
Query: 290 SINDFGAPGNCGLKDVVLALKWIQRNISTFGGDPDNVTIFGNSSGGVIVHLLVLSPMATG 469
+I+D + D + ++ NIS FGGDP+ + + G S+G I +L
Sbjct: 200 TISDM-------VTDASQGISFVCNNISAFGGDPNRIYLMGQSAGAHIAACALLEQATKE 252
Query: 470 LFHKSIIQSASAL 508
L +SI + S +
Sbjct: 253 LKGESISWTVSQI 265
>At3g02410.1 68416.m00228 hypothetical protein weak similarity to
kynurenine formamidase [Mus musculus] GI:21552719
Length = 422
Score = 39.5 bits (88), Expect = 0.002
Identities = 36/140 (25%), Positives = 67/140 (47%), Gaps = 2/140 (1%)
Frame = +2
Query: 116 IDVYTPNVKPDKLLPVMFWI--GSFGFTYTIDCIYDAKFINKQDVIFAKCNFRLGPFGFL 289
+D+Y P D L PV+ ++ G++ Y + ++D+I A ++R P G
Sbjct: 138 LDLYIPPTS-DGLKPVVVFVTGGAWIIGYKAWGSLLGLQLAERDIIVACLDYRNFPQG-- 194
Query: 290 SINDFGAPGNCGLKDVVLALKWIQRNISTFGGDPDNVTIFGNSSGGVIVHLLVLSPMATG 469
+I+D + D + ++ NIS FGGDP+ + + G S+G I +
Sbjct: 195 TISDM-------VSDAAQGISFVCNNISAFGGDPNRIYLMGQSAGAHI--------SSCA 239
Query: 470 LFHKSIIQSASALNNWSLTK 529
LF ++I +S +WS+++
Sbjct: 240 LFEQAIKESRGESISWSVSQ 259
>At1g26120.1 68414.m03188 esterase-related contains similaity to
esterase 6 GI:606998 from [Drosophila simulans] and
esterase GI:12584120 from [Sphingomonas elodea]
Length = 476
Score = 36.3 bits (80), Expect = 0.016
Identities = 21/69 (30%), Positives = 39/69 (56%)
Frame = +2
Query: 227 INKQDVIFAKCNFRLGPFGFLSINDFGAPGNCGLKDVVLALKWIQRNISTFGGDPDNVTI 406
++++D+I A ++R P G SI+D +KD + ++ +I+ +GGDPD + +
Sbjct: 232 LSERDIIVACIDYRNFPQG--SISDM-------VKDASSGISFVCNHIAEYGGDPDRIYL 282
Query: 407 FGNSSGGVI 433
G S+G I
Sbjct: 283 MGQSAGAHI 291
>At5g23530.1 68418.m02761 expressed protein contains similarity to
PrMC3 [Pinus radiata] GI:5487873
Length = 335
Score = 33.9 bits (74), Expect = 0.087
Identities = 38/136 (27%), Positives = 57/136 (41%), Gaps = 8/136 (5%)
Frame = +2
Query: 56 PQPLSFSFTYETIGSEDC-LYIDVYTPNVKPDKLLPVMFWI-GSFGFTYTIDCIYD---A 220
P+P++ T + + + L+ +YTP+V DK+ V+F+ G F F YD
Sbjct: 54 PKPVNIVSTSDFVVDQSRDLWFRLYTPHVSGDKIPVVVFFHGGGFAFLSPNAYPYDNVCR 113
Query: 221 KFINKQDVIFAKCNFRLGPFGFLSINDFGAPGNCGLKDVVLALKWIQRN---ISTFGGDP 391
+F K N+RL P + P D ALK+I+ N I D
Sbjct: 114 RFARKLPAYVISVNYRLAP-------EHRYPAQ--YDDGFDALKYIEENHGSILPANADL 164
Query: 392 DNVTIFGNSSGGVIVH 439
G+S+GG I H
Sbjct: 165 SRCFFAGDSAGGNIAH 180
>At4g14570.1 68417.m02243 acylaminoacyl-peptidase-related similar to
Acylamino-acid-releasing enzyme (EC 3.4.19.1)
(Acyl-peptide hydrolase) (APH) (Acylaminoacyl-peptidase)
(Swiss-Prot:P13676) [Rattus norvegicus]; annotated with
nonconsensus TT and CT acceptor splice sites.
Length = 764
Score = 31.9 bits (69), Expect = 0.35
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 311 PGNCGLKDVVLALKWIQRNISTFGGDPDNVTIFGNSSGGVI-VHLLVLSP 457
PG G +DV L + I DP +T+ G S GG + HL+ +P
Sbjct: 583 PGKVGSQDVKDCLLAVDHAIEMGIADPSRITVLGGSHGGFLTTHLIGQAP 632
>At3g05120.1 68416.m00556 expressed protein low similarity to PrMC3
[Pinus radiata] GI:5487873
Length = 345
Score = 30.7 bits (66), Expect = 0.81
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 7/114 (6%)
Frame = +2
Query: 152 LLPVMFWI--GSFGFTYTIDCIYDAKFINKQDVIFAKCNFRLGPFGFLSINDFGAPGN-- 319
++PV+ + GSF + IYD + ++ V KC +S+N AP N
Sbjct: 105 IVPVILFFHGGSFAHSSANSAIYDT--LCRRLVGLCKCVV-------VSVNYRRAPENPY 155
Query: 320 -CGLKDVVLALKWIQRNISTFGGDPDNVTIF--GNSSGGVIVHLLVLSPMATGL 472
C D +AL W+ V IF G+SSGG I H + L +G+
Sbjct: 156 PCAYDDGWIALNWVNSRSWLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGESGI 209
>At5g63700.1 68418.m07996 zinc finger (C3HC4 type RING finger)
family protein contains Pfam PF03126: Plus-3 domain;
contains Pfam PF02201: BAF60b domain of the SWIB
complex; contains Pfam PF00628: PHD-finger domain;
contains Prosite Zinc finger, C3HC4 type (RING finger),
signature; similar to CPRF interacting protein
(GI:9588690) [Petroselinum crispum]
Length = 571
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +3
Query: 72 SLLHMKQLDQKTVFTLMSTHLM*NL 146
S+ K ++QK ++TL++THL NL
Sbjct: 317 SIFRKKSINQKRIYTLLNTHLKENL 341
>At5g27320.1 68418.m03262 expressed protein similar to PrMC3 [Pinus
radiata] GI:5487873
Length = 344
Score = 29.1 bits (62), Expect = 2.5
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Frame = +2
Query: 287 LSINDFGAPGN---CGLKDVVLALKWIQRNISTFGGDPDNVTIF--GNSSGGVIVH 439
+S+N AP N C D LKW+ + V IF G+SSGG IVH
Sbjct: 141 VSVNYRRAPENRYPCAYDDGWAVLKWVNSSSWLRSKKDSKVRIFLAGDSSGGNIVH 196
>At2g34830.1 68415.m04276 WRKY family transcription factor
Length = 427
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +2
Query: 209 IYDAKFINKQDVIFAKCNFRLGPFGFLSINDFGAPGNCGLKD 334
I+DA N + + P+G +++N +P NC L D
Sbjct: 122 IHDASTCNSPAITVSSAAVAASPWGMINVNTTNSPRNCLLVD 163
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,153,226
Number of Sequences: 28952
Number of extensions: 316976
Number of successful extensions: 693
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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