Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_L09
(390 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 225 6e-60
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 225 6e-60
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 225 6e-60
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 225 6e-60
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 133 5e-32
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 116 7e-27
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 81 3e-16
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 75 2e-14
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 52 1e-07
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 52 1e-07
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 50 6e-07
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 50 7e-07
At5g08650.1 68418.m01029 GTP-binding protein LepA, putative 46 9e-06
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 42 1e-04
At5g13650.2 68418.m01585 elongation factor family protein contai... 39 0.001
At5g13650.1 68418.m01584 elongation factor family protein contai... 39 0.001
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 39 0.001
At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 33 0.068
At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 33 0.068
At1g17220.1 68414.m02098 translation initiation factor IF-2, chl... 27 0.16
At1g76825.1 68414.m08940 eukaryotic translation initiation facto... 30 0.63
At1g76810.1 68414.m08938 eukaryotic translation initiation facto... 30 0.63
At1g76720.1 68414.m08929 eukaryotic translation initiation facto... 30 0.63
At4g18330.2 68417.m02719 eukaryotic translation initiation facto... 29 0.84
At4g18330.1 68417.m02718 eukaryotic translation initiation facto... 29 0.84
At1g21160.1 68414.m02646 eukaryotic translation initiation facto... 29 0.84
At2g18720.1 68415.m02180 eukaryotic translation initiation facto... 29 1.1
At4g11160.1 68417.m01808 translation initiation factor IF-2, mit... 28 2.6
At1g04170.1 68414.m00407 eukaryotic translation initiation facto... 28 2.6
At3g56520.1 68416.m06285 no apical meristem (NAM) family protein... 27 3.4
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 27 4.5
At1g72600.1 68414.m08395 hydroxyproline-rich glycoprotein family... 27 4.5
At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putati... 27 5.9
At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putati... 27 5.9
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 225 bits (551), Expect = 6e-60
Identities = 105/116 (90%), Positives = 108/116 (93%)
Frame = +1
Query: 43 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 223 DKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 390
DKLKAERERGITIDIALWKFET KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLII 116
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 225 bits (551), Expect = 6e-60
Identities = 105/116 (90%), Positives = 108/116 (93%)
Frame = +1
Query: 43 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 223 DKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 390
DKLKAERERGITIDIALWKFET KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLII 116
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 225 bits (551), Expect = 6e-60
Identities = 105/116 (90%), Positives = 108/116 (93%)
Frame = +1
Query: 43 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 223 DKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 390
DKLKAERERGITIDIALWKFET KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLII 116
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 225 bits (551), Expect = 6e-60
Identities = 105/116 (90%), Positives = 108/116 (93%)
Frame = +1
Query: 43 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 223 DKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 390
DKLKAERERGITIDIALWKFET KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLII 116
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 133 bits (321), Expect = 5e-32
Identities = 54/109 (49%), Positives = 83/109 (76%)
Frame = +1
Query: 64 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 243
+N+ ++GHVDSGKST +G L++ G I ++ + K+EKEA+ GKGSF YAW LD+ ER
Sbjct: 240 LNLAIVGHVDSGKSTLSGRLLHLLGRISQKQMHKYEKEAKLQGKGSFAYAWALDESAEER 299
Query: 244 ERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 390
ERGIT+ +A+ F + +++V ++D+PGH+DF+ NMI G +QAD A+L++
Sbjct: 300 ERGITMTVAVAYFNSKRHHVVLLDSPGHKDFVPNMIAGATQADAAILVI 348
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 116 bits (278), Expect = 7e-27
Identities = 50/113 (44%), Positives = 79/113 (69%)
Frame = +1
Query: 52 EKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 231
+K H+N+V IGHVD+GKST G +++ G +D R I+K+EKEA++ + S+ A+++D
Sbjct: 98 KKRHLNVVFIGHVDAGKSTIGGQILFLSGQVDDRQIQKYEKEAKDKSRESWYMAYIMDTN 157
Query: 232 KAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 390
+ ER +G T+++ FET TI+DAPGH+ ++ NMI+G SQAD VL++
Sbjct: 158 EEERLKGKTVEVGRAHFETESTRFTILDAPGHKSYVPNMISGASQADIGVLVI 210
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 80.6 bits (190), Expect = 3e-16
Identities = 44/117 (37%), Positives = 63/117 (53%)
Frame = +1
Query: 40 KMGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 219
K ++K H+NI IGHVD GK+T T L I +K+++
Sbjct: 72 KFERKKPHVNIGTIGHVDHGKTTLTAALTMALASIGSSVAKKYDE--------------- 116
Query: 220 LDKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 390
+D ER RGITI+ A ++ET + +D PGH D++KNMITG +Q D A+L+V
Sbjct: 117 IDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVV 173
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 74.9 bits (176), Expect = 2e-14
Identities = 43/114 (37%), Positives = 60/114 (52%)
Frame = +1
Query: 49 KEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 228
+ K H+N+ IGHVD GK+T T + K E GK +DK
Sbjct: 63 RNKPHVNVGTIGHVDHGKTTLTAAIT---------------KVLAEEGKAKAIAFDEIDK 107
Query: 229 LKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 390
E++RGITI A ++ET K + +D PGH D++KNMITG +Q D +L+V
Sbjct: 108 APEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVV 161
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 52.0 bits (119), Expect = 1e-07
Identities = 37/108 (34%), Positives = 53/108 (49%)
Frame = +1
Query: 67 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 246
NI + H+DSGK+T T +++ G I E E ++ G G+ +D + ERE
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTGRIH----EIHEVRGRD-GVGA-----KMDSMDLERE 116
Query: 247 RGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 390
+GITI A Y V IID PGH DF + D A+L++
Sbjct: 117 KGITIQSAATYCTWKDYKVNIIDTPGHVDFTIEVERALRVLDGAILVL 164
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 52.0 bits (119), Expect = 1e-07
Identities = 37/108 (34%), Positives = 53/108 (49%)
Frame = +1
Query: 67 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 246
NI + H+DSGK+T T +++ G I E E ++ G G+ +D + ERE
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTGRIH----EIHEVRGRD-GVGA-----KMDSMDLERE 116
Query: 247 RGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 390
+GITI A Y V IID PGH DF + D A+L++
Sbjct: 117 KGITIQSAATYCTWKDYKVNIIDTPGHVDFTIEVERALRVLDGAILVL 164
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 50.0 bits (114), Expect = 6e-07
Identities = 33/94 (35%), Positives = 49/94 (52%)
Frame = +1
Query: 55 KVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 234
K + NI ++ H+D+GK+TTT ++Y G K E+ +G+ W ++
Sbjct: 94 KDYRNIGIMAHIDAGKTTTTERILYYTGRNYK---------IGEVHEGTATMDW----ME 140
Query: 235 AERERGITIDIALWKFETGKYYVTIIDAPGHRDF 336
E+ERGITI A K+ + IID PGH DF
Sbjct: 141 QEQERGITITSAATTTFWDKHRINIIDTPGHVDF 174
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 49.6 bits (113), Expect = 7e-07
Identities = 34/108 (31%), Positives = 51/108 (47%)
Frame = +1
Query: 67 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 246
NI ++ HVD GK+T HLI GG + GK F +D L E+
Sbjct: 11 NICILAHVDHGKTTLADHLIASSGG--------GVLHPRLAGKLRF-----MDYLDEEQR 57
Query: 247 RGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 390
R IT+ + + Y + +ID+PGH DF + T +D A+++V
Sbjct: 58 RAITMKSSSISLKYKDYSLNLIDSPGHMDFCSEVSTAARLSDGALVLV 105
>At5g08650.1 68418.m01029 GTP-binding protein LepA, putative
Length = 681
Score = 46.0 bits (104), Expect = 9e-06
Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 4/112 (3%)
Frame = +1
Query: 67 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 246
N +I H+D GKST L+ G + R + K F LD + ERE
Sbjct: 88 NFSIIAHIDHGKSTLADKLLQVTGTVQNRDM-----------KEQF-----LDNMDLERE 131
Query: 247 RGITIDIAL----WKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 390
RGITI + + +E + + +ID PGH DF + + + A+L+V
Sbjct: 132 RGITIKLQAARMRYVYEDTPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVV 183
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 42.3 bits (95), Expect = 1e-04
Identities = 42/129 (32%), Positives = 54/129 (41%), Gaps = 9/129 (6%)
Frame = +1
Query: 31 D*PKMGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKY 210
D K EK+ N +I H+D GKST L+ G I K G G +Y
Sbjct: 57 DLTKFPSEKIR-NFSIIAHIDHGKSTLADRLMELTGTIKK-------------GHGQPQY 102
Query: 211 AWVLDKLKAERERGITIDIALWKF---------ETGKYYVTIIDAPGHRDFIKNMITGTS 363
LDKL +RERGIT+ E Y + +ID PGH DF + S
Sbjct: 103 ---LDKL--QRERGITVKAQTATMFYENKVEDQEASGYLLNLIDTPGHVDFSYEVSRSLS 157
Query: 364 QADCAVLIV 390
A+L+V
Sbjct: 158 ACQGALLVV 166
>At5g13650.2 68418.m01585 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 676
Score = 39.1 bits (87), Expect = 0.001
Identities = 32/108 (29%), Positives = 47/108 (43%)
Frame = +1
Query: 67 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 246
NI ++ HVD GK+T ++ + K ++ Q M + ++D ERE
Sbjct: 85 NIAIVAHVDHGKTTLVDSMLRQA---------KVFRDNQVMQER------IMDSNDLERE 129
Query: 247 RGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 390
RGITI V IID PGH DF + + D +L+V
Sbjct: 130 RGITILSKNTSITYKNTKVNIIDTPGHSDFGGEVERVLNMVDGVLLVV 177
>At5g13650.1 68418.m01584 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 675
Score = 39.1 bits (87), Expect = 0.001
Identities = 32/108 (29%), Positives = 47/108 (43%)
Frame = +1
Query: 67 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 246
NI ++ HVD GK+T ++ + K ++ Q M + ++D ERE
Sbjct: 84 NIAIVAHVDHGKTTLVDSMLRQA---------KVFRDNQVMQER------IMDSNDLERE 128
Query: 247 RGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 390
RGITI V IID PGH DF + + D +L+V
Sbjct: 129 RGITILSKNTSITYKNTKVNIIDTPGHSDFGGEVERVLNMVDGVLLVV 176
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 38.7 bits (86), Expect = 0.001
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Frame = +1
Query: 67 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRT---IEKFEKEAQEMGKG-SFKYAWVLDKLK 234
N+ VI HVD GKST T L+ G I + + + A E +G + K + +
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYE 80
Query: 235 AERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 390
E ++ + +Y + +ID+PGH DF + D A+++V
Sbjct: 81 MTDE---SLKSFTGARDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVV 129
>At1g06220.2 68414.m00656 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 33.1 bits (72), Expect = 0.068
Identities = 33/113 (29%), Positives = 47/113 (41%), Gaps = 5/113 (4%)
Frame = +1
Query: 67 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 246
N+ ++GH+ GK+ L+ + + K EK KY D E+E
Sbjct: 140 NVALVGHLQHGKTVFMDMLVEQTHHMSTFNA-KNEKH--------MKYT---DTRVDEQE 187
Query: 247 RGITI-----DIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 390
R I+I + L + Y I+D PGH +F M AD AVLIV
Sbjct: 188 RNISIKAVPMSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIV 240
>At1g06220.1 68414.m00655 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 33.1 bits (72), Expect = 0.068
Identities = 33/113 (29%), Positives = 47/113 (41%), Gaps = 5/113 (4%)
Frame = +1
Query: 67 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 246
N+ ++GH+ GK+ L+ + + K EK KY D E+E
Sbjct: 140 NVALVGHLQHGKTVFMDMLVEQTHHMSTFNA-KNEKH--------MKYT---DTRVDEQE 187
Query: 247 RGITI-----DIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 390
R I+I + L + Y I+D PGH +F M AD AVLIV
Sbjct: 188 RNISIKAVPMSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIV 240
>At1g17220.1 68414.m02098 translation initiation factor IF-2,
chloroplast, putative similar to SP|P57997|IF2C_PHAVU
Translation initiation factor IF-2, chloroplast
precursor (PvIF2cp) {Phaseolus vulgaris}
Length = 1026
Score = 26.6 bits (56), Expect(2) = 0.16
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Frame = +1
Query: 226 KLKAERERGITIDIALWKFET---GKYYVTI-IDAPGHRDFIKNMITGTSQADCAVLIV 390
K+ A GIT I +K GK + +D PGH F G D A+++V
Sbjct: 525 KVAASEAGGITQGIGAYKVSVPVDGKLQSCVFLDTPGHEAFGAMRARGARVTDIAIIVV 583
Score = 23.8 bits (49), Expect(2) = 0.16
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +1
Query: 70 IVVIGHVDSGKSTTTGHL 123
I ++GHVD GK+T ++
Sbjct: 504 ITIMGHVDHGKTTLLDYI 521
>At1g76825.1 68414.m08940 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profile PF00009: Elongation
factor Tu GTP binding domain
Length = 630
Score = 29.9 bits (64), Expect = 0.63
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 307 IIDAPGHRDFIKNMITGTSQADCAVLIV 390
+ID PGH F G+S D A+L+V
Sbjct: 113 VIDTPGHESFTNLRSRGSSLCDLAILVV 140
>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to IF2
protein [Drosophila melanogaster] GI:7108770; contains
Pfam profile PF03144: Elongation factor Tu domain 2
Length = 1294
Score = 29.9 bits (64), Expect = 0.63
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 307 IIDAPGHRDFIKNMITGTSQADCAVLIV 390
+ID PGH F G+S D A+L+V
Sbjct: 772 VIDTPGHESFTNLRSRGSSLCDLAILVV 799
>At1g76720.1 68414.m08929 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1201
Score = 29.9 bits (64), Expect = 0.63
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 307 IIDAPGHRDFIKNMITGTSQADCAVLIV 390
+ID PGH F G+S D A+L+V
Sbjct: 705 VIDTPGHESFTNLRSRGSSLCDLAILVV 732
>At4g18330.2 68417.m02719 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 471
Score = 29.5 bits (63), Expect = 0.84
Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 14/132 (10%)
Frame = +1
Query: 37 PKMGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDK-RTIEKFEKEAQ-EMGKGSFK- 207
P++ + INI IGHV GKST ++ G+ R + E+ ++G + K
Sbjct: 31 PEVISRQATINIGTIGHVAHGKST----IVKAISGVQTVRFKNELERNITIKLGYANAKI 86
Query: 208 YAWVLDKLK---------AERERGITIDIALWKF--ETGKYYVTIIDAPGHRDFIKNMIT 354
Y DK + +E T D+ ++ T + +V+ +D PGH + M+
Sbjct: 87 YKCEDDKCPRPMCYKSYGSGKEDNPTCDVPGFENCKMTLRRHVSCVDCPGHDILMATMLN 146
Query: 355 GTSQADCAVLIV 390
G + D A+L++
Sbjct: 147 GAAIVDGALLLI 158
>At4g18330.1 68417.m02718 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 284
Score = 29.5 bits (63), Expect = 0.84
Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 14/132 (10%)
Frame = +1
Query: 37 PKMGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDK-RTIEKFEKEAQ-EMGKGSFK- 207
P++ + INI IGHV GKST ++ G+ R + E+ ++G + K
Sbjct: 31 PEVISRQATINIGTIGHVAHGKST----IVKAISGVQTVRFKNELERNITIKLGYANAKI 86
Query: 208 YAWVLDKLK---------AERERGITIDIALWKF--ETGKYYVTIIDAPGHRDFIKNMIT 354
Y DK + +E T D+ ++ T + +V+ +D PGH + M+
Sbjct: 87 YKCEDDKCPRPMCYKSYGSGKEDNPTCDVPGFENCKMTLRRHVSCVDCPGHDILMATMLN 146
Query: 355 GTSQADCAVLIV 390
G + D A+L++
Sbjct: 147 GAAIVDGALLLI 158
>At1g21160.1 68414.m02646 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1088
Score = 29.5 bits (63), Expect = 0.84
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 301 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 390
+ +ID PGH F G++ D A+L+V
Sbjct: 558 ILVIDTPGHESFTNLRSRGSNLCDLAILVV 587
>At2g18720.1 68415.m02180 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative
Length = 465
Score = 29.1 bits (62), Expect = 1.1
Identities = 30/113 (26%), Positives = 45/113 (39%)
Frame = +1
Query: 37 PKMGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAW 216
P++ + INI IGHV GKST ++ G+ T+ KF+ E + YA
Sbjct: 25 PEVISRQATINIGTIGHVAHGKST----IVKAVSGV--HTV-KFKSELERNITIKLGYA- 76
Query: 217 VLDKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADC 375
K + +A F +GK D GH + ++ S DC
Sbjct: 77 ---NAKIYKCEKCPRPVAYKSFGSGKEDNPSCDVSGHEKYKMKLLRHVSFVDC 126
Score = 28.7 bits (61), Expect = 1.5
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 298 YVTIIDAPGHRDFIKNMITGTSQADCAVLIV 390
+V+ +D PGH + M+ G + D A+LI+
Sbjct: 120 HVSFVDCPGHDILMATMLNGAAIMDGALLII 150
>At4g11160.1 68417.m01808 translation initiation factor IF-2,
mitochondrial, putative similar to SP|P46198|IF2M_BOVIN
Translation initiation factor IF-2, mitochondrial
precursor (IF-2Mt) (IF-2(Mt)) {Bos taurus}
Length = 743
Score = 27.9 bits (59), Expect = 2.6
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 301 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 390
+T +D PGH F + G + D VL+V
Sbjct: 270 ITFLDTPGHAAFSEMRARGAAVTDIVVLVV 299
>At1g04170.1 68414.m00407 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to gb|U37354 from S. pombe. ESTs
gb|T41979, gb|N37284 and gb|N37529 come from this gene
Length = 465
Score = 27.9 bits (59), Expect = 2.6
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 298 YVTIIDAPGHRDFIKNMITGTSQADCAVLIV 390
+V+ +D PGH + M+ G + D A+L++
Sbjct: 122 HVSFVDCPGHDILMATMLNGAAIMDGALLLI 152
>At3g56520.1 68416.m06285 no apical meristem (NAM) family protein
similar to nam-like protein 5 (GI:21105738 ) [Petunia x
hybrida]; hypothetical protein SENU5, senescence
up-regulated - Lycopersicon eculentum, PIR:T07182
Length = 175
Score = 27.5 bits (58), Expect = 3.4
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = -3
Query: 202 RNPYPFPGLPSRTFRWYVCRYH-RICRSSDQLLWT 101
R+P+ PG PS +Y CR S+ LWT
Sbjct: 50 RHPHDLPGYPSEEHWYYFCRKRDNQVTSNSHNLWT 84
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 27.1 bits (57), Expect = 4.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 282 RNRQILCHHHRRSWTQRFH 338
R++ + HHHRRS++Q H
Sbjct: 312 RHKHLPSHHHRRSYSQDHH 330
>At1g72600.1 68414.m08395 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 135
Score = 27.1 bits (57), Expect = 4.5
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +3
Query: 303 HHHRRSWTQRFHQEH 347
HH R+ W QR H +H
Sbjct: 70 HHRRKKWRQRRHHKH 84
>At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 26.6 bits (56), Expect = 5.9
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +1
Query: 67 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 189
N+V+IG +D+ + H+I + + + +K E+EA E+
Sbjct: 75 NVVLIGELDTEREELPPHMI-RVSEAEIKRAQKVEREASEL 114
>At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 26.6 bits (56), Expect = 5.9
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +1
Query: 67 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 189
N+V+IG +D+ + H+I + + + +K E+EA E+
Sbjct: 75 NVVLIGELDTEREELPPHMI-RVSEAEIKRAQKVEREASEL 114
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,586,009
Number of Sequences: 28952
Number of extensions: 173108
Number of successful extensions: 640
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 557595584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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