Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_L08
(678 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266 88 5e-18
05_04_0443 - 21283680-21283940,21284044-21284118,21284620-212846... 86 3e-17
01_05_0264 + 20168409-20168593,20168726-20169055,20170142-201706... 31 1.1
07_01_0771 + 5917550-5917829,5918390-5918526,5918617-5918742,591... 29 2.6
12_02_0735 - 22636835-22639502,22639755-22640734 29 4.5
06_01_0675 + 4937309-4937354,4937606-4937718,4937810-4937905,493... 28 7.9
03_05_0965 + 29256733-29257066,29257276-29258120,29258270-29258284 28 7.9
03_02_0922 - 12417328-12417816,12417929-12418399,12418568-124186... 28 7.9
01_05_0660 - 24071523-24071780,24071873-24072127,24072209-240723... 28 7.9
>01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266
Length = 272
Score = 88.2 bits (209), Expect = 5e-18
Identities = 46/123 (37%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Frame = +2
Query: 191 NTLDEPIKETFHRDLRAVGNKFYHVLIPR----EKSSLLKEWDLWGPLMLCTLMATMLQG 358
NTL EP+ +T RDL + + V+ P + L++WDLWGP + L
Sbjct: 96 NTLTEPVWDTVKRDLARIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSW 155
Query: 359 STDTADSVNDGGPEFAEVFVIVWIGAAVVTLNSKLLGGNISFFQSVCVLGYCLLPVAVSL 538
S S FA F ++ GA ++TLN LLGG+I FFQS+ +LGYCL P+ V
Sbjct: 156 SASVKKS-----EVFAVAFAVLAAGAIILTLNVLLLGGHIIFFQSLSLLGYCLFPLDVGA 210
Query: 539 IIC 547
++C
Sbjct: 211 LVC 213
>05_04_0443 -
21283680-21283940,21284044-21284118,21284620-21284649,
21286744-21287247
Length = 289
Score = 85.8 bits (203), Expect = 3e-17
Identities = 46/128 (35%), Positives = 65/128 (50%), Gaps = 9/128 (7%)
Frame = +2
Query: 191 NTLDEPIKETFHRDLRAVGNKFYHVLIPR----EKSSLLKEWDLWGPLMLCTLMATMLQG 358
NTL EP+ +T RDL + + V+ P + L++WDLWGP + L
Sbjct: 103 NTLTEPVLDTVKRDLARIVSNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSW 162
Query: 359 STDTADSVNDG-----GPEFAEVFVIVWIGAAVVTLNSKLLGGNISFFQSVCVLGYCLLP 523
S + FA F ++ GA ++TLN LLGG I+FFQS+ +LGYCL P
Sbjct: 163 SASVKKIIMFTRFLCKSEVFAVAFAVLAAGAIILTLNVLLLGGRINFFQSLSLLGYCLFP 222
Query: 524 VAVSLIIC 547
+ V +IC
Sbjct: 223 LDVGALIC 230
>01_05_0264 +
20168409-20168593,20168726-20169055,20170142-20170670,
20170825-20170958,20171080-20171252,20171274-20171840,
20172487-20172716,20172954-20172995,20173096-20173224
Length = 772
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -1
Query: 420 ITNTSANSGPPSL-TESAVSVEPWSIVAINVQSISGPHRSHSF 295
I NT+ N GP +L E + P SIV I+++ + G H F
Sbjct: 381 ILNTNPNMGPKALWKEEVLKRSPGSIVEIDIKEVDGRPYFHRF 423
>07_01_0771 +
5917550-5917829,5918390-5918526,5918617-5918742,
5919168-5919221,5919344-5919457,5919895-5919950,
5920017-5920058,5920580-5920655,5920765-5920836,
5920908-5921033,5921117-5921221,5921333-5921416,
5921636-5921683
Length = 439
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -1
Query: 471 PPSSLEFKVTTAAPIHTITNTSAN-SGPPSLTESAVSV 361
P +SL KV +A+P N + + PPSLT SA+S+
Sbjct: 195 PSNSLVLKVLSASPSAYSANPKSKLASPPSLTGSAISL 232
>12_02_0735 - 22636835-22639502,22639755-22640734
Length = 1215
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 485 FQSVCVLGYCLLPVAVSLIICRVILFSTQTTF-PFLL 592
F SV +L YCLLP AVSL + I+ TF FLL
Sbjct: 985 FTSVFLLAYCLLP-AVSLFSGKFIVQRLSATFLAFLL 1020
>06_01_0675 +
4937309-4937354,4937606-4937718,4937810-4937905,
4938003-4938059,4938145-4938300,4938402-4938486,
4938727-4938817,4938896-4939060,4939150-4939345,
4939593-4939731,4940187-4941874,4942575-4942765,
4942850-4942994
Length = 1055
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 137 GEMTIPNRAAPS-GDSMEFNTLDEPIKETFHRDLRAVGNKFYHVLIPREKSSLL 295
G ++P RAA ++F T+ P +E +DL + KF H+ + K LL
Sbjct: 140 GGFSVPRRAAEKIFPPLDF-TMQPPAQELIAKDLHDISWKFRHIYRGQPKRHLL 192
>03_05_0965 + 29256733-29257066,29257276-29258120,29258270-29258284
Length = 397
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Frame = +2
Query: 161 AAPSGDSMEFNTLDEPIKETFHRDLRAVGNKFYHVLIPREK-----SSLLKEWDLWGP 319
A P+G +++F++L + +RD+R VGN V I + LL W+L P
Sbjct: 193 ALPTGCNVDFDSLYLTAPPSQYRDIRCVGNSIRFVSIEGYNTLPGYNMLLSMWELMMP 250
>03_02_0922 -
12417328-12417816,12417929-12418399,12418568-12418663,
12418746-12418927,12419027-12419486
Length = 565
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 249 FPTALRSR*NVSLIGSSSVLNSILSPDGAARFGI 148
F T+ R L+G SSVL ++L + AA FG+
Sbjct: 472 FTTSARRNHPQFLVGGSSVLRALLGTELAAAFGV 505
>01_05_0660 - 24071523-24071780,24071873-24072127,24072209-24072380,
24072458-24072685,24072785-24072918,24073005-24073088,
24073231-24073521,24073599-24073931,24074016-24074266,
24074354-24074620,24074707-24074867,24074978-24075294,
24075386-24075667,24075753-24076054,24076147-24076237,
24076326-24076379,24076497-24076573,24076700-24076859,
24077129-24077213,24077421-24077630,24077736-24078097
Length = 1457
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/65 (27%), Positives = 28/65 (43%)
Frame = +2
Query: 239 AVGNKFYHVLIPREKSSLLKEWDLWGPLMLCTLMATMLQGSTDTADSVNDGGPEFAEVFV 418
A+ N F +IPR + + W W + TL ++ D + DG P +VFV
Sbjct: 1359 AIWNLFSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVVSQFGDIETPMEDGTP--VKVFV 1416
Query: 419 IVWIG 433
+ G
Sbjct: 1417 ENYFG 1421
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,447,565
Number of Sequences: 37544
Number of extensions: 418872
Number of successful extensions: 986
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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