Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_L08
(678 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g30260.1 68417.m04302 integral membrane Yip1 family protein c... 89 2e-18
At2g18840.1 68415.m02194 integral membrane Yip1 family protein c... 89 2e-18
At5g37020.1 68418.m04440 auxin-responsive factor (ARF8) identica... 30 1.6
At2g36300.1 68415.m04455 integral membrane Yip1 family protein c... 30 1.6
At1g69530.3 68414.m07995 expansin, putative (EXP1) identical to ... 29 3.7
At1g69530.2 68414.m07994 expansin, putative (EXP1) identical to ... 29 3.7
At1g69530.1 68414.m07993 expansin, putative (EXP1) identical to ... 29 3.7
At5g57035.1 68418.m07119 protein kinase family protein contains ... 28 4.9
At5g07080.1 68418.m00802 transferase family protein similar to 1... 28 6.5
At5g24280.1 68418.m02856 expressed protein ; expression supporte... 27 8.6
At4g27720.1 68417.m03984 expressed protein contains Pfam PF05631... 27 8.6
At4g22550.1 68417.m03255 phosphatidic acid phosphatase-related /... 27 8.6
At3g49630.1 68416.m05424 2-oxoacid-dependent oxidase, putative s... 27 8.6
At2g18030.2 68415.m02095 peptide methionine sulfoxide reductase ... 27 8.6
At2g18030.1 68415.m02096 peptide methionine sulfoxide reductase ... 27 8.6
>At4g30260.1 68417.m04302 integral membrane Yip1 family protein
contains Pfam domain, PF04893: Yip1 domain
Length = 280
Score = 89.4 bits (212), Expect = 2e-18
Identities = 49/130 (37%), Positives = 67/130 (51%), Gaps = 4/130 (3%)
Frame = +2
Query: 170 SGDSMEFNTLDEPIKETFHRDLRAVGNKFYHVLIPR----EKSSLLKEWDLWGPLMLCTL 337
SG NTL EP+ +T RDL + + V+ P + L++WDLWGP
Sbjct: 97 SGFGSPPNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVF 156
Query: 338 MATMLQGSTDTADSVNDGGPEFAEVFVIVWIGAAVVTLNSKLLGGNISFFQSVCVLGYCL 517
+ L S S FA F ++ GA ++TLN LLGG+I FFQS+ +LGYCL
Sbjct: 157 LGLTLSWSASVKKS-----EVFAVAFALLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCL 211
Query: 518 LPVAVSLIIC 547
P+ V +IC
Sbjct: 212 FPLDVGAVIC 221
>At2g18840.1 68415.m02194 integral membrane Yip1 family protein
contains Pfam domain, PF04893: Yip1 domain
Length = 281
Score = 89.0 bits (211), Expect = 2e-18
Identities = 47/123 (38%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Frame = +2
Query: 191 NTLDEPIKETFHRDLRAVGNKFYHVLIPR----EKSSLLKEWDLWGPLMLCTLMATMLQG 358
NTL EP+ +T RDL + + V+ P + L++WDLWGP + L
Sbjct: 105 NTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSW 164
Query: 359 STDTADSVNDGGPEFAEVFVIVWIGAAVVTLNSKLLGGNISFFQSVCVLGYCLLPVAVSL 538
S S FA F ++ GA ++TLN LLGG+I FFQS+ +LGYCL P+ V
Sbjct: 165 SASVKKS-----EVFAVAFALLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDVGA 219
Query: 539 IIC 547
+IC
Sbjct: 220 VIC 222
>At5g37020.1 68418.m04440 auxin-responsive factor (ARF8) identical
to auxin response factor 8 GI:4104931 from [Arabidopsis
thaliana]
Length = 811
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +2
Query: 137 GEMTIPNRAAPSGDSMEFNTLDEPIKETFHRDLRAVGNKFYHVLIPREKSSLL 295
G ++P RAA TL P +E RDL V KF H+ + K LL
Sbjct: 139 GGFSVPRRAAEKVFPPLDYTLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLL 191
>At2g36300.1 68415.m04455 integral membrane Yip1 family protein
contains Pfam domain, PF04893: Yip1 domain
Length = 255
Score = 29.9 bits (64), Expect = 1.6
Identities = 38/154 (24%), Positives = 63/154 (40%), Gaps = 3/154 (1%)
Frame = +2
Query: 146 TIPNRAAPSGDSMEFNTLDEPIKETFHRDLRAVGNKFYHVLIP-REKSSLLKEWDLWGPL 322
TI + ++ G S F +EP+ + + K +L P R ++ K+ DL GP+
Sbjct: 67 TIASSSSFGGGSASFED-EEPLLDELGIHPDQIWKKTRSILNPFRINQAVHKDSDLSGPI 125
Query: 323 MLCTLMATMLQGSTDTADSVNDGGPEFAEVFVIVWIGAAVVTLNSKLLGGNISFFQSVCV 502
L + + V G + +F+ V GN++ +
Sbjct: 126 FLYLALCLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGR------NGNLNLHTCTSL 179
Query: 503 LGYCLLPVAVSLIICRVILFSTQTTFP--FLLEA 598
+GYCLLPV +++ V LF Q P F+L A
Sbjct: 180 VGYCLLPV---VVLSAVSLFVPQGAGPVRFVLAA 210
>At1g69530.3 68414.m07995 expansin, putative (EXP1) identical to
expansin (At-EXP1) [Arabidopsis thaliana] GI:1041702;
alpha-expansin gene family, PMID:11641069
Length = 275
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = -1
Query: 543 MIRETATG-RRQYPNTQTDWK-NEMLPPSSLEFKVTTAAPIHTITNTSANSG 394
M++ + TG + N +W+ N L SL FKVTT+ ++N AN+G
Sbjct: 186 MVKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGQTIVSNNVANAG 237
>At1g69530.2 68414.m07994 expansin, putative (EXP1) identical to
expansin (At-EXP1) [Arabidopsis thaliana] GI:1041702;
alpha-expansin gene family, PMID:11641069
Length = 250
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = -1
Query: 543 MIRETATG-RRQYPNTQTDWK-NEMLPPSSLEFKVTTAAPIHTITNTSANSG 394
M++ + TG + N +W+ N L SL FKVTT+ ++N AN+G
Sbjct: 186 MVKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGQTIVSNNVANAG 237
>At1g69530.1 68414.m07993 expansin, putative (EXP1) identical to
expansin (At-EXP1) [Arabidopsis thaliana] GI:1041702;
alpha-expansin gene family, PMID:11641069
Length = 250
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = -1
Query: 543 MIRETATG-RRQYPNTQTDWK-NEMLPPSSLEFKVTTAAPIHTITNTSANSG 394
M++ + TG + N +W+ N L SL FKVTT+ ++N AN+G
Sbjct: 186 MVKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGQTIVSNNVANAG 237
>At5g57035.1 68418.m07119 protein kinase family protein contains
Pfam profile: PF00069 Eukaryotic protein kinase domain
Length = 786
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 146 TIPNRAAPSGDSMEFNTLDEPIKETFHRDLRAVGNKFYHVLIP 274
T+ +PSG + LDE + + RDLR +F V +P
Sbjct: 61 TVTTIPSPSGSKIPIEELDESVVSMYKRDLR---KEFEQVFVP 100
>At5g07080.1 68418.m00802 transferase family protein similar to
10-deacetylbaccatin III-10-O-acetyl transferase - Taxus
cuspidata, AF193765, EMBL:AF193765; contains Pfam
transferase family domain PF00248
Length = 450
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = -1
Query: 180 LSPDGAARFGIV--ISPSITPTSPDGYISNLVSK 85
LSPDG + FG+ I + P P+GY N K
Sbjct: 288 LSPDGTSLFGMAVGIRRIVEPPLPEGYYGNAFVK 321
>At5g24280.1 68418.m02856 expressed protein ; expression supported
by MPSS
Length = 1634
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 467 GGNISFFQSVCVLGYCLLPVAVSLIICRVILFSTQTT 577
G S F C +CL P+ + +++ R+ LFS + T
Sbjct: 242 GPYASMFLGRCDFSFCL-PILICIVLLRLTLFSVRRT 277
>At4g27720.1 68417.m03984 expressed protein contains Pfam PF05631:
Protein of unknown function (DUF791)
Length = 460
Score = 27.5 bits (58), Expect = 8.6
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Frame = +2
Query: 323 MLCTLMATMLQGSTDTADSVNDGGPEFAEVFVIVWI--GAAVV-----TL---NSKLLGG 472
+ T M + GS+ + ++ P+ IV++ GAA++ TL SK+ GG
Sbjct: 286 IFATFMLASMLGSSLASRLLSRSTPKVESYMQIVFLVSGAALLLPILMTLFIAPSKVKGG 345
Query: 473 NISFFQSVCVLGYCLLPVAVSL 538
ISF +LG+C+ V L
Sbjct: 346 GISFSGCFQLLGFCIFEACVGL 367
>At4g22550.1 68417.m03255 phosphatidic acid phosphatase-related /
PAP2-related contains Pfam profile PF01569: PAP2
superfamily
Length = 213
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 383 NDGGPEFAEVFVIVWIGAAVVTLNSKLLG 469
NDG + EV V+VWI A V ++ LLG
Sbjct: 152 NDGDVK-VEVVVVVWIWATVTAISRILLG 179
>At3g49630.1 68416.m05424 2-oxoacid-dependent oxidase, putative
strong similarity to partial cds of 2-oxoacid-dependent
oxidase (din11) from GI:10834554 [Arabidopsis thaliana]
Length = 369
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Frame = -2
Query: 665 VDCPRGFRRGKSSP-----HEADQ*YDEPQEEKEMLSEY 564
+DC + F++GK A+Q + PQE KE++ EY
Sbjct: 148 IDCYKEFKQGKHGDIGKVMEGANQWPENPQEYKELMEEY 186
>At2g18030.2 68415.m02095 peptide methionine sulfoxide reductase
family protein similar to SP|P08761 Ecdysone-induced
protein 28/29 kDa {Drosophila melanogaster}; contains
Pfam profile PF01625: Peptide methionine sulfoxide
reductase
Length = 192
Score = 27.5 bits (58), Expect = 8.6
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 16 VFFFFFCPYFIDESVNLYLKNE 81
VFFFF C +D++V++ + N+
Sbjct: 18 VFFFFLCVSLLDKTVSIRISNQ 39
>At2g18030.1 68415.m02096 peptide methionine sulfoxide reductase
family protein similar to SP|P08761 Ecdysone-induced
protein 28/29 kDa {Drosophila melanogaster}; contains
Pfam profile PF01625: Peptide methionine sulfoxide
reductase
Length = 254
Score = 27.5 bits (58), Expect = 8.6
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 16 VFFFFFCPYFIDESVNLYLKNE 81
VFFFF C +D++V++ + N+
Sbjct: 18 VFFFFLCVSLLDKTVSIRISNQ 39
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,284,004
Number of Sequences: 28952
Number of extensions: 329215
Number of successful extensions: 808
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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