Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_L04
         (369 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0352 + 7698775-7698821,7699054-7699130,7699654-7701122           29   0.86 
05_01_0079 + 531617-531734,531987-532059,532152-532261,532400-53...    29   1.5  
11_02_0118 - 8486986-8488925,8488971-8489041,8489884-8490728           28   2.6  
03_02_0663 + 10256898-10258915,10259162-10259248,10259463-102597...    27   6.1  
11_06_0020 - 19304740-19304790,19304869-19304973,19305063-193051...    26   8.1  
11_04_0310 + 16218439-16219383                                         26   8.1  
08_02_0650 - 19708479-19710507,19711033-19711889                       26   8.1  
08_02_0464 - 17463066-17465136,17470821-17471650                       26   8.1  
04_04_0672 + 27164628-27164792,27164903-27164965,27165298-271654...    26   8.1  

>09_02_0352 + 7698775-7698821,7699054-7699130,7699654-7701122
          Length = 530

 Score = 29.5 bits (63), Expect = 0.86
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +2

Query: 230 CSLDLELRRKKILSI--FTVCSNLWQMSSNSQTIFYYKPH 343
           C LD+ELRR   L +   TV +N W++  N   +    PH
Sbjct: 366 CVLDVELRRLTTLHVPTLTVDNNTWRVLRNLMALEQNNPH 405


>05_01_0079 +
           531617-531734,531987-532059,532152-532261,532400-532543,
           532628-532736,532836-533182,533260-533333,533478-533782,
           534168-534294,534385-534414,534589-534837
          Length = 561

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +3

Query: 15  LEHCIAPFLDQCDADEDHRITLA--EWGKCLQLD 110
           L H +  FL  CD+ + H   L+  EW   LQLD
Sbjct: 322 LSHKVVVFLSTCDSVDFHHTVLSQLEWSPGLQLD 355


>11_02_0118 - 8486986-8488925,8488971-8489041,8489884-8490728
          Length = 951

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +3

Query: 9   MSLEHCIAPFLDQCDADEDHRITLAEWGKCLQLDEYELEDRCDEFIDDL*HGALRI 176
           + L+   A  L   D D D  I + EW   ++   Y++ED  D+FI  +  G+ R+
Sbjct: 40  LELQSMNAFLLKLADMD-DLDIQVKEWRNQIRELSYDIEDCIDDFIHQMDGGSSRV 94


>03_02_0663 +
           10256898-10258915,10259162-10259248,10259463-10259724,
           10259802-10260111,10260535-10260645,10260861-10261090
          Length = 1005

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = +3

Query: 27  IAPFLDQCDADEDHRITLAEWGKCLQLDEYELEDRCDEFIDD--L*H--GALRILR 182
           + P LD C    DH   LA   + +   E E +D CD F++   L H  G  R+LR
Sbjct: 88  LEPALDACLRPVDHVKALAASFRRMSSAEAEGDDLCDVFLEQHALFHALGDARLLR 143


>11_06_0020 -
           19304740-19304790,19304869-19304973,19305063-19305113,
           19305377-19305442,19305722-19305882,19306050-19306146,
           19306516-19306563,19307173-19307261,19307447-19307492
          Length = 237

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 11/47 (23%), Positives = 24/47 (51%)
 Frame = -2

Query: 164 TMLQVIDEFVAAVLQLVLIELQTFAPLGERDAVVLVRIALVEERRDA 24
           +++ ++   +  + Q V  + QT  P+GE  A+ L+     +  +DA
Sbjct: 71  SLMTIVSVIIGRIFQSVPAQFQTTLPIGEYAAIALLAFFGFKSIKDA 117


>11_04_0310 + 16218439-16219383
          Length = 314

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = +3

Query: 9   MSLEHCIAPFLDQCDADEDHRITLAEWGKCLQLDEYELEDRCDEFIDDL*H 161
           M+  H     L     D+ H     +W K ++   Y++ED  D+F   L H
Sbjct: 44  MASIHAFLTNLSSSGNDDGHDAQTKDWMKQVRDIAYDMEDCVDDFAHRLRH 94


>08_02_0650 - 19708479-19710507,19711033-19711889
          Length = 961

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 51  DADEDHRITLAEWGKCLQLDEYELEDRCDEFIDDL*H 161
           D++E+    + EW + L+   Y++ED  D F+  L H
Sbjct: 57  DSEEEPSSQVKEWMRQLRELSYDVEDCIDVFVHRLGH 93


>08_02_0464 - 17463066-17465136,17470821-17471650
          Length = 966

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 39  LDQCDADEDHRITLAEWGKCLQLDEYELEDRCDEFI 146
           L +C A E+  I +  W K L+   +++ED  DE++
Sbjct: 46  LQKCAAMENPDIQVKTWTKELRELSHDIEDCVDEYV 81


>04_04_0672 +
           27164628-27164792,27164903-27164965,27165298-27165408,
           27165454-27165537,27166081-27166194,27166901-27167494,
           27167604-27167675,27167761-27167997
          Length = 479

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 236 LDLELRRKKILSIFTVCSNLWQMSSNSQT 322
           L++E  R+++ S+   CS LW++  N  T
Sbjct: 206 LNVEPTREELNSLSRACSRLWELDMNRLT 234


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,967,492
Number of Sequences: 37544
Number of extensions: 132639
Number of successful extensions: 370
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)