Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_L04
(369 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56344| Best HMM Match : Kazal_2 (HMM E-Value=1.5e-09) 33 0.096
SB_23132| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.51
SB_45722| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.51
SB_20364| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.8e-16) 30 0.67
SB_59779| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.2e-26) 30 0.67
SB_58159| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.67
SB_26577| Best HMM Match : Vicilin_N (HMM E-Value=1.5) 29 1.2
SB_41973| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_27392| Best HMM Match : Kazal_1 (HMM E-Value=0.00072) 28 2.7
SB_46027| Best HMM Match : Fibrinogen_C (HMM E-Value=0.24) 27 4.8
SB_56472| Best HMM Match : Transposase_5 (HMM E-Value=1.2) 26 8.3
SB_26568| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.3
SB_26400| Best HMM Match : RVT_1 (HMM E-Value=1.1e-30) 26 8.3
>SB_56344| Best HMM Match : Kazal_2 (HMM E-Value=1.5e-09)
Length = 217
Score = 32.7 bits (71), Expect = 0.096
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +3
Query: 6 LMSLEHCIAPFLDQCDADEDHRITLAEWGKCLQLDEYE 119
+M E C A FL CD + I+ +EW C L E E
Sbjct: 172 MMIYEPCAAGFLWSCDLNRKQGISRSEWDMCFTLAERE 209
>SB_23132| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 60
Score = 30.3 bits (65), Expect = 0.51
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 18 EHCIAPFLDQCDADEDHRITLAEWGKC 98
E C+ F+D CD D IT EW C
Sbjct: 27 EPCMVGFMDACDFDGHPGITRHEWNAC 53
>SB_45722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1080
Score = 30.3 bits (65), Expect = 0.51
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 18 EHCIAPFLDQCDADEDHRITLAEWGKC 98
E C+ F+D CD D IT EW C
Sbjct: 754 EPCMVGFMDACDFDGHPGITRHEWNAC 780
>SB_20364| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.8e-16)
Length = 187
Score = 29.9 bits (64), Expect = 0.67
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 24 CIAPFLDQCDADEDHRITLAEWGKCLQLDE 113
C F+ CD ++D RI+ EW C + E
Sbjct: 85 CSKTFVGYCDENQDQRISRNEWYACFGVQE 114
>SB_59779| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.2e-26)
Length = 452
Score = 29.9 bits (64), Expect = 0.67
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 18 EHCIAPFLDQCDADEDHRITLAEWGKCLQL 107
E+CI F ++CDA +D + +L E QL
Sbjct: 53 ENCITQFFEKCDATKDGQFSLLESANASQL 82
>SB_58159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 443
Score = 29.9 bits (64), Expect = 0.67
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 24 CIAPFLDQCDADEDHRITLAEWGKCL 101
C L CD D+D+ ++L EW CL
Sbjct: 409 CSRKLLADCDFDKDNGLSLNEWSYCL 434
>SB_26577| Best HMM Match : Vicilin_N (HMM E-Value=1.5)
Length = 649
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 88 GANV-CNSMSTSWRTAATNSSMTCSMVL 168
G+NV CNSMS +W TN +M+ VL
Sbjct: 249 GSNVSCNSMSGAWGKKPTNRTMSTECVL 276
>SB_41973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2504
Score = 28.7 bits (61), Expect = 1.6
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = -1
Query: 255 LLNSKSKLQSHVIKSEWRYVEPNIIVEFSKHHAT 154
++ + +SH++ + +P I FS+H AT
Sbjct: 1425 IVKHEQNFRSHILPDRYLIAQPTIFTSFSRHQAT 1458
>SB_27392| Best HMM Match : Kazal_1 (HMM E-Value=0.00072)
Length = 196
Score = 27.9 bits (59), Expect = 2.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 3 PLMSLEHCIAPFLDQCDADEDHRITLAEWGKC 98
PL+ E CI F+ CD +++ I EW C
Sbjct: 148 PLLFHERCIYGFVMSCDVNKNSVIDKQEWLLC 179
>SB_46027| Best HMM Match : Fibrinogen_C (HMM E-Value=0.24)
Length = 901
Score = 27.1 bits (57), Expect = 4.8
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = -1
Query: 276 KIDKIFFLLNSKSKLQSHVIKSEWRYVEP 190
K+D +F ++ + +H+ K+EWR + P
Sbjct: 788 KVDSLFSVIAPGKYVATHISKNEWRKLVP 816
>SB_56472| Best HMM Match : Transposase_5 (HMM E-Value=1.2)
Length = 615
Score = 26.2 bits (55), Expect = 8.3
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +3
Query: 51 DADEDHRITLAEW-GKCLQLDEYELED 128
DAD++ R+TL EW L+ DE LE+
Sbjct: 171 DADKEKRVTLCEWFCNVLENDENFLEN 197
>SB_26568| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 692
Score = 26.2 bits (55), Expect = 8.3
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 24 CIAPFLDQCDADEDHRITLAEWGKCLQLDEYELEDRCDE 140
C P LD+ + D EW + +LD E+ RCD+
Sbjct: 256 CPLPTLDESLSYSDVIKEYEEWTEICKLDLEEVRSRCDK 294
>SB_26400| Best HMM Match : RVT_1 (HMM E-Value=1.1e-30)
Length = 1084
Score = 26.2 bits (55), Expect = 8.3
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +3
Query: 60 EDHRITLAEWGKCLQLDEYELEDRC 134
ED + L +WGKC LE RC
Sbjct: 423 EDGIVQLEQWGKCEGCRTERLEHRC 447
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,259,525
Number of Sequences: 59808
Number of extensions: 153477
Number of successful extensions: 433
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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