Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_L04
         (369 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g24280.1 68418.m02856 expressed protein ; expression supporte...    28   2.2  
At5g66210.2 68418.m08341 calcium-dependent protein kinase family...    27   5.2  
At5g66210.1 68418.m08340 calcium-dependent protein kinase family...    27   5.2  
At4g21700.1 68417.m03142 hypothetical protein                          27   5.2  
At4g13590.1 68417.m02116 expressed protein contains Pfam profile...    26   6.8  

>At5g24280.1 68418.m02856 expressed protein ; expression supported by
            MPSS
          Length = 1634

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +3

Query: 6    LMSLEHCIAPFLDQCDADEDHRITLAEWGKCLQLDEYELEDRC 134
            LM +        ++ + DE+ R+ L E  KCLQ      E  C
Sbjct: 1287 LMDMAQYTEDLKEKINIDEERRVELEERLKCLQAQREHAEQEC 1329


>At5g66210.2 68418.m08341 calcium-dependent protein kinase family
           protein / CDPK family protein contains Pfam domains,
           PF00069: Protein kinase domain and PF00036: EF hand
          Length = 523

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 15  LEHCIAPFLDQCDADEDHRITLAEWGKCLQ 104
           L   I P LD+ D D D +I+L E+ + L+
Sbjct: 475 LRGSIDPLLDEADIDRDGKISLHEFRRLLR 504


>At5g66210.1 68418.m08340 calcium-dependent protein kinase family
           protein / CDPK family protein contains Pfam domains,
           PF00069: Protein kinase domain and PF00036: EF hand
          Length = 523

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 15  LEHCIAPFLDQCDADEDHRITLAEWGKCLQ 104
           L   I P LD+ D D D +I+L E+ + L+
Sbjct: 475 LRGSIDPLLDEADIDRDGKISLHEFRRLLR 504


>At4g21700.1 68417.m03142 hypothetical protein 
          Length = 962

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
 Frame = +2

Query: 227 DCSLDLELRRKKILSIFT---VCSNLWQMSSNSQTIFYYKPHF 346
           DCSL L LR   ILSI +   V   LW   + S   ++ +  F
Sbjct: 389 DCSLRLSLRFPAILSIKSMAPVVGELWSAQAESDPSYFRRIEF 431


>At4g13590.1 68417.m02116 expressed protein contains Pfam profile
           PF01169: Uncharacterized protein family UPF0016
          Length = 359

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 11/47 (23%), Positives = 25/47 (53%)
 Frame = -2

Query: 164 TMLQVIDEFVAAVLQLVLIELQTFAPLGERDAVVLVRIALVEERRDA 24
           +++ ++   +  + Q V  + QT  P+GE  A+ L+    ++  +DA
Sbjct: 187 SLMTILSVVIGKIFQSVPAQFQTTLPIGEYAAIALLMFFGLKSIKDA 233


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,378,536
Number of Sequences: 28952
Number of extensions: 105386
Number of successful extensions: 294
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 487896136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)