Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_L03
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    28   0.91 
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    27   2.1  
SPCC1620.06c |||ribose-phosphate pyrophosphokinase |Schizosaccha...    26   4.9  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   6.4  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    25   6.4  
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce...    25   8.5  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    25   8.5  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    25   8.5  

>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 309 VRLRTSGAPMNLCGGGVRSPTRAP 380
           VRLR S +  N+   GVRSPT +P
Sbjct: 461 VRLRRSSSQSNIEPNGVRSPTSSP 484


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 422 SDSVSRE--PDPLTLSSFNRIASLLSSLTMRSSVCRYCIL 535
           SDSVS +  P  L  S   RIA  LSS+ MR     +C+L
Sbjct: 499 SDSVSLQSTPSELITSQLTRIAKSLSSVLMRFDT-DFCLL 537


>SPCC1620.06c |||ribose-phosphate pyrophosphokinase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 321

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = +3

Query: 207 LELMYDQVQVHGLLPVDLRVADGQLLRVLPEHLDVRLRTSGAPMNLCGGGVRSPTRAPR 383
           ++L   Q+Q    +PVD   A+  +LR + E++D  +  +       GG  R+   A R
Sbjct: 129 MDLHASQIQGFFNVPVDNLYAEPSVLRYIRENIDTTVNPTVIVSPDAGGAKRATALADR 187


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 3   TCEARCRAGTTGPCRGPVRS 62
           TC+ RC +G  G C  P+ +
Sbjct: 352 TCKKRCHSGLCGACFEPINA 371


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = -3

Query: 507 LIVSEDNKLAIRLNEESVRGSGSRDTESLIHRH*LALSDMCRVERVWVSAPRRRR 343
           L+++E    A  ++E  +  + S  +   I    L    +  + R+WVSA RR++
Sbjct: 758 LLLAERISSAYIVDELELNNNNSTSSAVYIKNENLRKGFVLGISRIWVSASRRKQ 812


>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 760

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 518 IHSISLLVKIINSRFD*TRKALGGPARETPSH 423
           IH+I+L   ++ SRFD     L  P+RET  H
Sbjct: 524 IHNINLPAALL-SRFDILFLILDTPSRETDEH 554


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = +2

Query: 341 SLRRRGALTHTRSTRHMSLSAS*CLCISDSVSREPDPLTLSSFNRIASLLSSLTMRSSV 517
           SLRR+  LT   S RH   S        D+   E    + +SF+  AS  SS +++ SV
Sbjct: 552 SLRRKNTLTRRPSIRHARSSP-----YIDTGHNEASKFSHTSFDPKASSKSSNSLKESV 605


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 546 KRNNSIQYLHTLDLIVSEDNKL 481
           KRN S    H+L  IV ED+KL
Sbjct: 63  KRNESEDISHSLPSIVHEDDKL 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,057,152
Number of Sequences: 5004
Number of extensions: 36250
Number of successful extensions: 102
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)