Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_L03
(602 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0016 + 190329-191210,206896-207033,208029-208103,208533-20... 39 0.004
07_01_0985 - 8297560-8297610,8297728-8297939,8298327-8298449,829... 39 0.004
04_01_0427 - 5626614-5626625,5626716-5626773,5628650-5628756,562... 36 0.033
03_01_0318 - 2495617-2497788 30 1.2
03_06_0638 + 35222994-35223265,35223521-35223610,35224189-352243... 29 2.1
11_01_0382 - 2892887-2893161,2893593-2893717,2893801-2894013,289... 28 5.0
04_04_0723 - 27572697-27572793,27572842-27572903,27573229-27573414 28 6.5
02_05_1210 - 34954006-34955412 28 6.5
01_06_1330 - 36361275-36361448,36361778-36361973,36362248-363623... 28 6.5
01_06_0604 + 30536172-30537143 28 6.5
01_05_0202 + 19238425-19239272,19239356-19239586,19239688-19239883 28 6.5
11_02_0085 - 8162346-8162942,8165568-8166100,8166180-8166906 27 8.7
01_06_1210 + 35430143-35430796,35430912-35431004,35431397-354315... 27 8.7
>10_01_0016 +
190329-191210,206896-207033,208029-208103,208533-208639,
209193-209250,210183-210242,210320-210394,210504-210641,
211766-211820,212134-212256,212645-212883
Length = 649
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = -1
Query: 272 IGDPEIDWEETVYLNLVVHQFEYTLTVAICT 180
I +DWE + YLNL+ H YT+TVAIC+
Sbjct: 372 INSAGVDWERSFYLNLIAHT-SYTVTVAICS 401
>07_01_0985 -
8297560-8297610,8297728-8297939,8298327-8298449,
8298763-8298817,8299940-8300077,8300187-8300261,
8300339-8300398,8301335-8301392,8301948-8302054,
8302484-8302558,8302643-8302838,8304222-8304301,
8308887-8309757,8310672-8310679
Length = 702
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = -1
Query: 272 IGDPEIDWEETVYLNLVVHQFEYTLTVAICT 180
I +DWE + YLNL+ H YT+TVAIC+
Sbjct: 417 INSAGVDWERSFYLNLIAHT-SYTVTVAICS 446
>04_01_0427 -
5626614-5626625,5626716-5626773,5628650-5628756,
5629202-5629276,5629365-5629557,5631122-5631207
Length = 176
Score = 35.5 bits (78), Expect = 0.033
Identities = 13/27 (48%), Positives = 21/27 (77%)
Frame = -1
Query: 260 EIDWEETVYLNLVVHQFEYTLTVAICT 180
+++WE + YLNL+ H Y++TVAIC+
Sbjct: 129 DVNWERSFYLNLIAHT-SYSVTVAICS 154
>03_01_0318 - 2495617-2497788
Length = 723
Score = 30.3 bits (65), Expect = 1.2
Identities = 29/76 (38%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Frame = +3
Query: 171 ARPRADRHGQCVLELM---YDQVQVHGLLPVD-LRVADGQLLRVLPEHLDVRLRTSGAPM 338
AR R G V EL+ + G P D +RV G+ L +L LD R R GA M
Sbjct: 475 AREMIGRTGGVVSELVAMFLPATEAVGDRPADAVRVEAGEALAMLA--LDSR-RNCGAIM 531
Query: 339 NLCGGGVRSPTRAPRD 386
CGGGV A D
Sbjct: 532 TACGGGVERLVEAMSD 547
>03_06_0638 +
35222994-35223265,35223521-35223610,35224189-35224349,
35224701-35224770,35224871-35224925,35225413-35225496,
35225960-35225998,35226503-35226549,35226723-35226834
Length = 309
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = -3
Query: 363 SAPRRRRDS*AHRLF--ADGRRGVPEGLEEAAHRRPGDRLGGDRVPEPGRTSVRVHT 199
+A +RRRD R+ RRG +G RRP R G +P P RT VH+
Sbjct: 42 AARQRRRDGGLGRVLRGVGHRRGDGQGQGAGRQRRPLWRQQGQLIPPPLRTFSVVHS 98
>11_01_0382 -
2892887-2893161,2893593-2893717,2893801-2894013,
2894101-2895363,2895669-2895712
Length = 639
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 469 QSNREFIIFTNNEIECM*VLYTVVSFCKLYIFYKVVI 579
+SN+EF + I+ VL T VSF KL +F VV+
Sbjct: 507 RSNKEFDDLVKHVIDYDIVLETDVSFAKLLVFPSVVL 543
>04_04_0723 - 27572697-27572793,27572842-27572903,27573229-27573414
Length = 114
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -3
Query: 516 TLDLIVSEDNKLAIRLNEESVRGSGSRDT 430
+L +IVS L IR ++E GSGS+DT
Sbjct: 27 SLSIIVSCKEHLNIRKSKEKKAGSGSKDT 55
>02_05_1210 - 34954006-34955412
Length = 468
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -2
Query: 415 QTLTSTERHVSRGARVG-ERTPPPQRFIGAPL 323
+T TS ++ GA G +R PPP+RF+ P+
Sbjct: 5 ETSTSDSLVLATGAAQGPKRKPPPKRFVHTPI 36
>01_06_1330 -
36361275-36361448,36361778-36361973,36362248-36362325,
36362685-36362807,36363206-36363463,36363914-36364073,
36364702-36364812,36365159-36365429,36365514-36365663,
36366383-36367090
Length = 742
Score = 27.9 bits (59), Expect = 6.5
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +2
Query: 14 PVPRRYDWPLPWPRAK 61
P P+ Y P+PWPR++
Sbjct: 219 PAPKGYKAPIPWPRSR 234
>01_06_0604 + 30536172-30537143
Length = 323
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 15 RCRAGTTGPCRGPVRSSSTG*ASDAR 92
R RA +GPCR P SS G + R
Sbjct: 209 RARASVSGPCRAPPPSSRRGTSQSCR 234
>01_05_0202 + 19238425-19239272,19239356-19239586,19239688-19239883
Length = 424
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 413 LCISDSVSREPDPLTLSSFNRIASLLSS 496
+CI++ S DPL LS+FN I ++S+
Sbjct: 334 VCITERRSLSTDPLNLSTFNIIFEVISA 361
>11_02_0085 - 8162346-8162942,8165568-8166100,8166180-8166906
Length = 618
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 280 FFESFRNTSTSVCEQAVRL*ISAAAGCAHPHALHA 384
F + RN S + ++ + + S+ +GCA HALHA
Sbjct: 202 FIAAMRN-SADIFDRLLAIPYSSHSGCAGDHALHA 235
>01_06_1210 +
35430143-35430796,35430912-35431004,35431397-35431546,
35431817-35432076,35433378-35433641,35434475-35434682
Length = 542
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 14 PVPRRYDWPLPWPRAK 61
P+P Y PLPWPR++
Sbjct: 201 PLPTGYRSPLPWPRSR 216
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,217,634
Number of Sequences: 37544
Number of extensions: 313769
Number of successful extensions: 1051
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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