Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_L03
         (602 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49709| Best HMM Match : UPAR_LY6 (HMM E-Value=1.8)                  30   1.7  
SB_45210| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_1473| Best HMM Match : DUF551 (HMM E-Value=1.6)                     28   5.1  
SB_59689| Best HMM Match : Pkinase (HMM E-Value=0.007)                 27   8.8  
SB_45993| Best HMM Match : TEP1_N (HMM E-Value=0.48)                   27   8.8  
SB_49210| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_24442| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_49709| Best HMM Match : UPAR_LY6 (HMM E-Value=1.8)
          Length = 437

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +2

Query: 368 HTRSTRHMSLSAS*CLCISDSVSREPDPLTLSSFNRIASLL 490
           HT   R +SL ++  LC   SVSRE D  +   F R    L
Sbjct: 338 HTTRDRRLSLESTSKLCSERSVSRETDDESCQQFRRYVCYL 378


>SB_45210| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 675

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = -3

Query: 576 NHLIKYIQFTKRNNSIQYLHTLDLIVSEDNKLAIRLNEESVRGSGSRDTESLIHRH 409
           N L+K    + R NS+     L++IV ++    +  N E V+G+G  D  S + RH
Sbjct: 177 NALVKSASSSPRRNSLA--DALNIIVHKNEVQELIKNCEGVKGNGIDDPRSSLFRH 230


>SB_1473| Best HMM Match : DUF551 (HMM E-Value=1.6)
          Length = 917

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 258 DRLGGDRVPEPGRTSVRVHTDRGDLHADEPK 166
           DR+GG+ VP P R       D    H + P+
Sbjct: 566 DRVGGEHVPRPQRCGAHPENDLAHDHRNNPR 596


>SB_59689| Best HMM Match : Pkinase (HMM E-Value=0.007)
          Length = 881

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -3

Query: 459 SVRG-SGSRDTESLIHRH*LALSDMCRVERVWVSAPR 352
           SV G +GS+  E+L+H   LAL+ +   E +W + P+
Sbjct: 226 SVYGWTGSKKMENLVHDPELALTSVSGTELIWGNRPQ 262


>SB_45993| Best HMM Match : TEP1_N (HMM E-Value=0.48)
          Length = 369

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +1

Query: 310 SVCEQAVRL*ISAAAGCAHPHALHATHVAQC*LVSVYQ*LGVSRAGPP 453
           S+C Q V + I    GC + H+   +  AQC  V+ Y  LG      P
Sbjct: 316 SLCAQCVGVVIRTVRGCRYAHSAWVSLFAQC--VTQYIDLGTGLKAEP 361


>SB_49210| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 350 AAEIHRRTACSQTDVEVFRKDSKKLPIGDPEID 252
           A  + RR      + E F  DS+ LP+G P+ D
Sbjct: 21  AVTLFRRETHDSPEFEDFPTDSEPLPVGPPDAD 53


>SB_24442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
 Frame = -3

Query: 348 RRDS*AHRLFADGRRGVPE-GLEEAAHRRP--GDRLG--GDRVPEPGRTSVRVHTDRG 190
           RR + AHR      +GV E G   +A R P    R G  G R   PGR   R H +RG
Sbjct: 298 RRGNRAHRERGARTQGVAEIGHTGSAAREPRASRRSGTHGARCENPGRRGDRAHRERG 355


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,846,242
Number of Sequences: 59808
Number of extensions: 334160
Number of successful extensions: 1654
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1653
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)