Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_L03
         (602 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39677-1|AAC47961.2|  457|Caenorhabditis elegans Hypothetical pr...    64   7e-11
Z81581-7|CAB04659.1|  269|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z48006-1|CAA88047.1|  642|Caenorhabditis elegans Hypothetical pr...    28   4.5  

>U39677-1|AAC47961.2|  457|Caenorhabditis elegans Hypothetical
           protein C16E9.2a protein.
          Length = 457

 Score = 64.1 bits (149), Expect = 7e-11
 Identities = 26/65 (40%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
 Frame = -1

Query: 320 SQTDVEVFRKDSKKLPIG-DPEIDWEETVYLNLVVHQFEYTLTVAICTRTSPKELQVLKR 144
           +Q+ ++VFR+ SK  P   D   +WEETV LN+++ Q ++ +T A+CT+T P+ LQ++++
Sbjct: 120 NQSLLQVFRRHSKNQPTPCDDSYNWEETVCLNIIMQQIDFYVTCAVCTKTGPQNLQIIRK 179

Query: 143 HSQKV 129
           + Q+V
Sbjct: 180 NCQRV 184


>Z81581-7|CAB04659.1|  269|Caenorhabditis elegans Hypothetical
           protein T02E1.7 protein.
          Length = 269

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/67 (22%), Positives = 36/67 (53%)
 Frame = +2

Query: 365 THTRSTRHMSLSAS*CLCISDSVSREPDPLTLSSFNRIASLLSSLTMRSSVCRYCILLFR 544
           T+   TR++S+ A+  L +++++ R+P P   +   R    +   ++  + CR C+ L  
Sbjct: 113 TYHLLTRNISIVAAIMLLVAENMLRKPKPANYTQLPRDEHEIEVTSVLLAACRVCLNLM- 171

Query: 545 FVNCIYF 565
            ++ ++F
Sbjct: 172 LISMVHF 178


>Z48006-1|CAA88047.1|  642|Caenorhabditis elegans Hypothetical
           protein F19C6.1 protein.
          Length = 642

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -3

Query: 321 FADGRRGVPEGLEEAAHRRPGDRLGGDRV--PEPGRTSVRVH 202
           F++  R +  GL    H+ PG RLG  RV  PE G   +R H
Sbjct: 429 FSEAARTLCRGL---LHKEPGFRLGCRRVGRPEDGAEEIRAH 467


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,937,532
Number of Sequences: 27780
Number of extensions: 231274
Number of successful extensions: 674
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)