Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_L03
         (602 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.3  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   9.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.3  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   9.3  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 279 LLRVLPEHLDVRLR 320
           LL VLPEH+ V++R
Sbjct: 237 LLSVLPEHVAVKMR 250


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 54  RGHGRGQSYRRG 19
           RGHG+G S  RG
Sbjct: 84  RGHGKGGSRGRG 95


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
 Frame = -3

Query: 345 RDS*AHRLFADGRRGVPEG----LEEA-AHRRPGDRLGGDRVPE 229
           RD     L  +G R +P+G    LE+       G+RLG DRV E
Sbjct: 285 RDLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAGNRLGSDRVDE 328


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = +3

Query: 243 LLPVDLRVADGQLLRVL 293
           LLP+D+R  +G ++ ++
Sbjct: 26  LLPIDMRFNEGHIVSIV 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,428
Number of Sequences: 438
Number of extensions: 2725
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)