Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_L03
(602 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g59520.3 68414.m06686 expressed protein (CW7) 38 0.004
At1g59520.2 68414.m06684 expressed protein (CW7) 38 0.004
At1g59520.1 68414.m06685 expressed protein (CW7) 38 0.004
At2g13540.1 68415.m01493 mRNA cap-binding protein (ABH1) identic... 30 1.4
At5g06050.1 68418.m00670 dehydration-responsive protein-related ... 29 3.1
At4g12270.1 68417.m01944 copper amine oxidase family protein con... 28 4.1
At1g33940.1 68414.m04206 hypothetical protein 28 4.1
At5g63180.1 68418.m07932 pectate lyase family protein similar to... 27 7.2
At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transfera... 27 7.2
At1g15280.2 68414.m01829 glycine-rich protein 27 7.2
At1g15280.1 68414.m01828 glycine-rich protein 27 9.6
>At1g59520.3 68414.m06686 expressed protein (CW7)
Length = 388
Score = 38.3 bits (85), Expect = 0.004
Identities = 15/35 (42%), Positives = 24/35 (68%)
Frame = -1
Query: 260 EIDWEETVYLNLVVHQFEYTLTVAICTRTSPKELQ 156
E+DW ++ YLN++ H +T+TVAIC+ + K Q
Sbjct: 110 EVDWRKSFYLNMIAHT-SFTVTVAICSNEALKTYQ 143
>At1g59520.2 68414.m06684 expressed protein (CW7)
Length = 319
Score = 38.3 bits (85), Expect = 0.004
Identities = 15/35 (42%), Positives = 24/35 (68%)
Frame = -1
Query: 260 EIDWEETVYLNLVVHQFEYTLTVAICTRTSPKELQ 156
E+DW ++ YLN++ H +T+TVAIC+ + K Q
Sbjct: 110 EVDWRKSFYLNMIAHT-SFTVTVAICSNEALKTYQ 143
>At1g59520.1 68414.m06685 expressed protein (CW7)
Length = 388
Score = 38.3 bits (85), Expect = 0.004
Identities = 15/35 (42%), Positives = 24/35 (68%)
Frame = -1
Query: 260 EIDWEETVYLNLVVHQFEYTLTVAICTRTSPKELQ 156
E+DW ++ YLN++ H +T+TVAIC+ + K Q
Sbjct: 110 EVDWRKSFYLNMIAHT-SFTVTVAICSNEALKTYQ 143
>At2g13540.1 68415.m01493 mRNA cap-binding protein (ABH1) identical
to mRNA cap binding protein [Arabidopsis thaliana]
GI:15192738; contains Pfam profile PF02854: MIF4G
domain; identical to cDNA nuclear cap-binding protein
CBP80 GI:8515770
Length = 848
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = -1
Query: 332 RTACSQTDVEVFRKDSKKLPIGDPEIDWEETVYLNLVVHQFEYTLTVAICT 180
+T Q E+ RK +K D + EET+Y VH FE TLT+ + T
Sbjct: 494 KTEEQQLSAELSRKVKEKQTARDMIVWIEETIY---PVHGFEVTLTIVVQT 541
>At5g06050.1 68418.m00670 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 682
Score = 28.7 bits (61), Expect = 3.1
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 2 NVRGPVPRRYDWPLPWPRAK 61
N P+P+ Y P+PWPR++
Sbjct: 193 NCTVPIPQGYRSPIPWPRSR 212
>At4g12270.1 68417.m01944 copper amine oxidase family protein
contains similarity to copper amine oxidase [Cicer
arietinum] gi|3819099|emb|CAA08855; contains Pfam
domains PF02728: Copper amine oxidase, N3 domain and
PF02727: Copper amine oxidase, N2 domain
Length = 460
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +2
Query: 419 ISDSVSREPDPLTLSSFNRIASLLSSLTMRSS 514
+SD+ + DPLT+ N++ S+LSS + +S
Sbjct: 78 VSDTPNHPLDPLTVMEINKVRSILSSHALFAS 109
>At1g33940.1 68414.m04206 hypothetical protein
Length = 497
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 97 GARASLAQPVEELRTGPRQGPVVPARHRAS 8
G ++ +++L TG R GPV P RAS
Sbjct: 212 GLLDTITNDIQQLMTGRRHGPVSPLNSRAS 241
>At5g63180.1 68418.m07932 pectate lyase family protein similar to
pectate lyase GP:14289169 from [Salix gilgiana]
Length = 432
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = +3
Query: 195 GQCVLELMYDQVQVHGLLPVDLRVADGQLLRVLPEHLDVRLRTSGAPMNLCGG 353
G C+ + +HGL D + +R PEH R + G +++ GG
Sbjct: 185 GPCITIQYVTNIIIHGLHIHDCKQGGNTYVRDSPEHYGYRTVSDGDGVSIFGG 237
>At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 456
Score = 27.5 bits (58), Expect = 7.2
Identities = 9/33 (27%), Positives = 19/33 (57%)
Frame = +2
Query: 488 LSSLTMRSSVCRYCILLFRFVNCIYFIRWLLIN 586
L S + S + L+ F +C+ +++W+L+N
Sbjct: 174 LPSFMLPSGGAHFYNLMAEFADCLRYVKWVLVN 206
>At1g15280.2 68414.m01829 glycine-rich protein
Length = 585
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -3
Query: 108 GGREARARH*LSRLKSFARGHGRGQSYRRGTGPRTL 1
G + + R R + RG G+G+ Y RG+ TL
Sbjct: 161 GEKHSDQRMSRGRFRGHGRGRGQGRGYARGSSSNTL 196
>At1g15280.1 68414.m01828 glycine-rich protein
Length = 584
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 72 RLKSFARGHGRGQSYRRGTGPRTL 1
R + RG G+G+ Y RG+ TL
Sbjct: 172 RFRGHGRGRGQGRGYARGSSSNTL 195
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,212,691
Number of Sequences: 28952
Number of extensions: 208834
Number of successful extensions: 662
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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