Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_L01
         (465 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0095 + 41053562-41053603,41054609-41054846,41055064-410553...    27   9.8  

>01_07_0095 +
           41053562-41053603,41054609-41054846,41055064-41055312,
           41055419-41055469,41056044-41056256,41056305-41056367,
           41056422-41056474,41056953-41057067,41057150-41057404,
           41057531-41058618
          Length = 788

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 179 LKLTLISFLFIWIRGTLPRYRYD 111
           L L  +S ++IW  GT  +Y+YD
Sbjct: 488 LALIFMSVMYIWHYGTRKKYQYD 510


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,722,178
Number of Sequences: 37544
Number of extensions: 55038
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)