Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_K24
         (605 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g18260.1 68414.m02277 suppressor of lin-12-like protein-relat...    30   1.4  
At1g34350.1 68414.m04264 expressed protein                             28   5.5  
At4g38070.1 68417.m05377 bHLH family protein contains Pfam profi...    27   9.6  

>At1g18260.1 68414.m02277 suppressor of lin-12-like protein-related
           / sel-1 protein-related similar to Sel-1 homolog
           precursor (Suppressor of lin-12-like protein)
           (Sel-1L)(SP:Q9UBV2) {Homo sapiens}
          Length = 678

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -3

Query: 144 YEIVKMQYKSKHQKFIHHVLVSLNNFNKKSKISLLFYY 31
           Y I  M+ KSK + F+HH   +    N +SK++L F Y
Sbjct: 134 YGIGMMREKSKSKSFLHHNFAAAGG-NMQSKMALAFTY 170


>At1g34350.1 68414.m04264 expressed protein
          Length = 163

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 142 ILYCRFFFLNETSFKLCYVNFKFKKVSLNHMQKL 243
           +L      L  T F LCY+  K+K+  L H  +L
Sbjct: 124 LLVIAMIILINTLFSLCYLIVKWKRAELRHRARL 157


>At4g38070.1 68417.m05377 bHLH family protein contains Pfam profile:
            PF00010 helix-loop-helix DNA-binding domain; PMID:
            12679534; putative bHLH131 transcription factor
          Length = 1513

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +1

Query: 82   NKYMMYEFLMF*FI-LHFYNFILYCRFFFLNETSFKLCYVNFKFKKVSLNHMQKLLSVYS 258
            N+Y  Y++L+F FI ++ +N         L+ +   LC        VSL+H Q   S++S
Sbjct: 1221 NRYYYYDYLLFVFIYIYIHNKFNIPSNVLLSPS---LCVTMVLLHHVSLSHYQNSSSLFS 1277


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,151,393
Number of Sequences: 28952
Number of extensions: 141776
Number of successful extensions: 210
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)