Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_K23
         (566 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|...    30   0.21 
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    27   2.5  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    26   4.4  
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    25   5.9  
SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces p...    25   5.9  
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa...    25   7.7  

>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 362

 Score = 30.3 bits (65), Expect = 0.21
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 44  FHIDFRYNLLCVNKKVSVLEEKRSTSFEASSDIRKL 151
           + IDF+Y  LC+N+K + L  + S S      + +L
Sbjct: 256 YDIDFKYKWLCINEKCNKLYGRHSKSINPQKQVCRL 291


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +3

Query: 120 HLKPVPILGNYGQYILLQKYFGQVSQKLCQEFRNEPYFGTYYGTEPA 260
           +L P P  G   Q++  Q  +G V   L Q    EP   +Y   E A
Sbjct: 105 NLVPTPSAGTPSQFMDAQNPYGAVYNALSQFSETEPKMPSYMDDEEA 151


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -2

Query: 553 RIIKGLASTALVAAVSMSNVLSNASAHFSIK*NMFFIFNDEKSGV 419
           RIIKGL  T L +++ + N L N     S   N     N E+S +
Sbjct: 14  RIIKGLQYTPLASSIPLENGLQNVLYPSSKFQNEPLQLNSEESSI 58


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
 Frame = +3

Query: 267 VLSPELLKLVFTKDFYYFNSRDNSNHNFREVITRNIFFNHG--NKWKIVRQNLTPLFS-- 434
           V+  ELLK V   DFY  N+  NS       +T + +  H   +K KI+      L S  
Sbjct: 671 VIDWELLKNVCVYDFYDQNAISNSISESEPSMTASKYLCHSFVSKRKIILW-FWDLISHY 729

Query: 435 SLKMKNMFYL 464
           SLKM+ +F +
Sbjct: 730 SLKMQKLFLI 739


>SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = -3

Query: 234 QNMVRYGIPGIVSGILVQSIFGVKYTARNFLISELA 127
           ++++RYG+P   S ++ Q +   +   +N L+S+ A
Sbjct: 310 ESILRYGLPPDFSSVIFQPMAKSEVKIKNILLSKYA 345


>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
            Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1215

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +3

Query: 405  VRQNLTPLFSSLKMKNMFYLIEKCALALESTLD---IETAATSAVEA 536
            +R+ ++  F  LK K     +EKCAL+ +S  D    E    SAV A
Sbjct: 1123 LREEVSFQFDLLKKKYTQEYLEKCALSNQSAFDSSEYEERINSAVAA 1169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,175,283
Number of Sequences: 5004
Number of extensions: 44244
Number of successful extensions: 135
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)