Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_K22
(491 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc... 148 4e-37
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa... 148 4e-37
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz... 42 4e-05
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc... 26 3.5
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 25 4.7
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ... 25 4.7
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 25 4.7
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2... 25 8.2
>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
S16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 140
Score = 148 bits (359), Expect = 4e-37
Identities = 67/106 (63%), Positives = 88/106 (83%)
Frame = +3
Query: 30 IQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGV 209
+Q+VQ FG+K ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+GV
Sbjct: 1 MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60
Query: 210 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDIL 347
DIRV V GGGHV+Q+YAIRQAISKA++A+YQK+VDE SK E+K L
Sbjct: 61 DIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKAL 106
Score = 64.5 bits (150), Expect = 8e-12
Identities = 30/45 (66%), Positives = 34/45 (75%)
Frame = +1
Query: 316 KHLRRRSKTF*VQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 450
+H + K + YDR+LLVADPRR EPKKFGG GARAR QKSYR
Sbjct: 96 EHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQKSYR 140
>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
S16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 140
Score = 148 bits (359), Expect = 4e-37
Identities = 67/106 (63%), Positives = 88/106 (83%)
Frame = +3
Query: 30 IQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGV 209
+Q+VQ FG+K ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+GV
Sbjct: 1 MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60
Query: 210 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDIL 347
DIRV V GGGHV+Q+YAIRQAISKA++A+YQK+VDE SK E+K L
Sbjct: 61 DIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKAL 106
Score = 64.5 bits (150), Expect = 8e-12
Identities = 30/45 (66%), Positives = 34/45 (75%)
Frame = +1
Query: 316 KHLRRRSKTF*VQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 450
+H + K + YDR+LLVADPRR EPKKFGG GARAR QKSYR
Sbjct: 96 EHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQKSYR 140
>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 132
Score = 42.3 bits (95), Expect = 4e-05
Identities = 26/80 (32%), Positives = 39/80 (48%)
Frame = +3
Query: 51 GRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVDIRVTVK 230
G++K++ A G G VNG P D+ R++ K L + + ++ TV
Sbjct: 12 GKRKSSKATVKMLPGTGKFYVNGSPFDVYFQRMVHRK-HAVYPLAACNRLTNYNVWATVH 70
Query: 231 GGGHVAQVYAIRQAISKALI 290
GGG Q A+ AISK+LI
Sbjct: 71 GGGPTGQSGAVHAAISKSLI 90
>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 465
Score = 25.8 bits (54), Expect = 3.5
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +3
Query: 249 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILSS 353
Q+ + Q ++K+L + +VD+ +EI++ILSS
Sbjct: 428 QINSHIQGLTKSLNRRFVSFVDQDELEEIREILSS 462
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 25.4 bits (53), Expect = 4.7
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -2
Query: 418 LDHRISWARNDEGQRPANFCRIELRMSLISFLDA 317
LDH+IS +NDE + N + EL +SL L+A
Sbjct: 346 LDHQISVMQNDE--KRINNAKTELSLSLEKKLEA 377
>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 4.7
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -2
Query: 115 FTRNTPCPRLQYA-TAVAVFLRPKTCTAWIGS 23
+T+N PCPR ++ T P T +WI S
Sbjct: 341 YTQNIPCPRAGHSHTYELAPASPNTSISWIQS 372
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 25.4 bits (53), Expect = 4.7
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = -2
Query: 253 TCATCPPPFTVTLISTP 203
T +CPPP T+ +++ P
Sbjct: 184 TSTSCPPPTTILIVTVP 200
>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
Byr2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 659
Score = 24.6 bits (51), Expect = 8.2
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = +3
Query: 213 IRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILSSIRQKFAG 374
IR + G G QVY A S L+A Q +D S E KD + + AG
Sbjct: 395 IRGALIGSGSFGQVYLGMNASSGELMAVKQVILDSVS--ESKDRHAKLLDALAG 446
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,236,790
Number of Sequences: 5004
Number of extensions: 46291
Number of successful extensions: 140
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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