Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_K22
(491 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0152 - 1168928-1169377 151 4e-37
11_01_0155 - 1287003-1287452 151 4e-37
07_03_1553 - 27653473-27653490,27653634-27653673,27653852-276539... 38 0.006
03_06_0097 - 31632238-31632525,31633386-31633769 38 0.006
02_05_0330 - 27996080-27996757,27996836-27997366,27998124-27998303 29 1.5
09_04_0524 + 18321110-18323978,18324098-18324576 29 2.7
01_03_0227 + 13967966-13968559 28 3.5
11_01_0523 - 4109070-4109984,4110532-4110936 28 4.7
04_04_1154 - 31297628-31298020,31298150-31298300,31298389-312986... 28 4.7
02_05_1314 - 35661824-35661912,35662031-35662454,35662689-356627... 27 8.2
>12_01_0152 - 1168928-1169377
Length = 149
Score = 151 bits (365), Expect = 4e-37
Identities = 66/110 (60%), Positives = 88/110 (80%)
Frame = +3
Query: 21 REPIQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 200
R P VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 201 SGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILS 350
+D+R+ V+GGG +Q+YAIRQAI+KAL+A+YQKYVDEASKKE+KDI +
Sbjct: 67 KDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFA 116
Score = 68.9 bits (161), Expect = 2e-12
Identities = 30/42 (71%), Positives = 35/42 (83%)
Frame = +1
Query: 325 RRRSKTF*VQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 450
++ K +YDR+LLVADPRRCEPKKFGG GARAR+QKSYR
Sbjct: 108 KKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149
>11_01_0155 - 1287003-1287452
Length = 149
Score = 151 bits (365), Expect = 4e-37
Identities = 66/110 (60%), Positives = 88/110 (80%)
Frame = +3
Query: 21 REPIQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 200
R P VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 201 SGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILS 350
+D+R+ V+GGG +Q+YAIRQAI+KAL+A+YQKYVDEASKKE+KDI +
Sbjct: 67 KDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFA 116
Score = 68.9 bits (161), Expect = 2e-12
Identities = 30/42 (71%), Positives = 35/42 (83%)
Frame = +1
Query: 325 RRRSKTF*VQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 450
++ K +YDR+LLVADPRRCEPKKFGG GARAR+QKSYR
Sbjct: 108 KKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149
>07_03_1553 -
27653473-27653490,27653634-27653673,27653852-27653939,
27654150-27654230,27654644-27655084,27655692-27656325
Length = 433
Score = 37.5 bits (83), Expect = 0.006
Identities = 26/79 (32%), Positives = 38/79 (48%)
Frame = +3
Query: 51 GRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVDIRVTVK 230
G++K + A + + G G VN + D P +L ++ + D+ TVK
Sbjct: 295 GKRKCSIARVWIQPGDGKFIVNDKQFDSYFP-ILDHRADLLRPFTVTKTLGRWDVTCTVK 353
Query: 231 GGGHVAQVYAIRQAISKAL 287
GGG QV AIR IS+AL
Sbjct: 354 GGGVSGQVGAIRLGISRAL 372
>03_06_0097 - 31632238-31632525,31633386-31633769
Length = 223
Score = 37.5 bits (83), Expect = 0.006
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Frame = +3
Query: 33 QAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLV---EPRLLQYKLQEPILLLGKEKFS 203
Q + GR+KTA A + G G + +N R P ++Y + P++ LG E +
Sbjct: 96 QRITATGRRKTAIARVVLQEGTGRVFINFRDAKEYLQGNPMWMEY-CKVPLVTLGFE--N 152
Query: 204 GVDIRVTVKGGGHVAQVYAIRQAISKALI 290
D+ V V GGG Q AI +++AL+
Sbjct: 153 SYDVFVKVHGGGLSGQAQAICLGVARALV 181
>02_05_0330 - 27996080-27996757,27996836-27997366,27998124-27998303
Length = 462
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 68 NCGSILQTRTWSVACKWTPPRPGRTQTSS 154
+C S +Q R+ SV W PP G+T+T S
Sbjct: 275 DCVSAMQQRSSSVRLIWGPPGTGKTKTIS 303
>09_04_0524 + 18321110-18323978,18324098-18324576
Length = 1115
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +3
Query: 231 GGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILSSIRQ 362
G G A V+ +RQA+S A + ++ D + K++ +L IR+
Sbjct: 1026 GAGADADVHEMRQAMSVAALCVARRADDRPAMKDVVALLKEIRR 1069
>01_03_0227 + 13967966-13968559
Length = 197
Score = 28.3 bits (60), Expect = 3.5
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 402 EIRWSRRPCQIPEILPXISF 461
E RW+RRP Q+P + +SF
Sbjct: 71 EQRWTRRPTQVPPPITAVSF 90
>11_01_0523 - 4109070-4109984,4110532-4110936
Length = 439
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 231 GGGHVAQVYAIRQAISKALIAFY 299
GGG V +++A++KAL+AFY
Sbjct: 48 GGGGFFDVGRLKEALAKALVAFY 70
>04_04_1154 -
31297628-31298020,31298150-31298300,31298389-31298620,
31298700-31298910,31299137-31299255,31299341-31299415,
31299991-31300189,31300258-31300664,31300775-31300839,
31300967-31301011,31301449-31301520,31301597-31301671,
31301912-31301983,31302178-31302249,31302525-31302596,
31302880-31302951,31303056-31303127,31304064-31304135,
31304375-31304561,31304686-31304815
Length = 930
Score = 27.9 bits (59), Expect = 4.7
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 114 NGRPLDLVEPRLLQYKLQEPILLL 185
NG PLD V+P+L ++ +E I ++
Sbjct: 807 NGHPLDFVDPKLSEFNSEEVIRVI 830
>02_05_1314 -
35661824-35661912,35662031-35662454,35662689-35662787,
35662886-35662995,35663263-35663516,35664080-35664098,
35664834-35665075,35665662-35666401
Length = 658
Score = 27.1 bits (57), Expect = 8.2
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = +3
Query: 237 GHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILSSIRQKFAGR*PSSLRAQEIRWS 416
G + +VY R I ++ Q +D K + + + IRQ + G P S+R E R S
Sbjct: 184 GKLWKVY--RPGIENWIVGLLQPVIDNLHKPDYVNRVE-IRQFYLGEEPLSVRNVERRTS 240
Query: 417 RR 422
RR
Sbjct: 241 RR 242
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,403,417
Number of Sequences: 37544
Number of extensions: 331541
Number of successful extensions: 953
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -