Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_K22
         (491 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)             109   9e-25
SB_2591| Best HMM Match : No HMM Matches (HMM E-Value=.)               42   3e-04
SB_50457| Best HMM Match : Amidase (HMM E-Value=2.6e-36)               32   0.22 
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   4.8  
SB_31479| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.60028e...    27   6.4  
SB_50765| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_26268| Best HMM Match : TIMP (HMM E-Value=2e-06)                    27   8.4  

>SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score =  109 bits (263), Expect = 9e-25
 Identities = 49/63 (77%), Positives = 59/63 (93%)
 Frame = +3

Query: 159 KLQEPILLLGKEKFSGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIK 338
           K++EPILLLGKE+F GVDIRV VKGGGH +++YAIRQAISK+L+A+YQKYVDE SKKEI+
Sbjct: 11  KVEEPILLLGKERFEGVDIRVRVKGGGHTSRIYAIRQAISKSLVAYYQKYVDEVSKKEIR 70

Query: 339 DIL 347
           DIL
Sbjct: 71  DIL 73



 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 31/34 (91%), Positives = 32/34 (94%)
 Frame = +1

Query: 349 VQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 450
           VQYDRSLLVADPRR E KKFGGPGAR+RYQKSYR
Sbjct: 74  VQYDRSLLVADPRRTEAKKFGGPGARSRYQKSYR 107


>SB_2591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 533

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 3/108 (2%)
 Frame = +3

Query: 51  GRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVDIRVTVK 230
           G +K + A A+  +G G + VN RP      RL Q K Q        +     D    V 
Sbjct: 338 GYRKRSVAKAWVMKGSGKITVNDRPFVEYFSRL-QDKQQILFPFQVVDCVGQFDASCHVL 396

Query: 231 GGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDIL---SSIRQK 365
           GGG   Q  AIR AIS+AL+ F + ++ E  ++EI + L   S +R+K
Sbjct: 397 GGGLTGQAGAIRLAISRALLNFSEDHL-EPLQEEIPESLNGKSPVRRK 443


>SB_50457| Best HMM Match : Amidase (HMM E-Value=2.6e-36)
          Length = 391

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +3

Query: 210 DIRVTVKGGGHVAQVYAIRQAISKALIAF 296
           DI+V V GGG   Q  AI+  I++ALI F
Sbjct: 323 DIKVNVHGGGESGQAGAIKHGITRALIDF 351


>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 5/23 (21%)
 Frame = -2

Query: 430  WHGRLDHRISWA-----RNDEGQ 377
            WHGRL++R SW+     RND  Q
Sbjct: 953  WHGRLNNRYSWSGKPKNRNDRSQ 975


>SB_31479| Best HMM Match : Peptidase_M13_N (HMM
           E-Value=1.60028e-42)
          Length = 627

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +3

Query: 288 IAFYQKYVDEASKKEIKDILSSIRQKFAGR*P 383
           + F   + D+A+KK ++++   +RQ F  R P
Sbjct: 554 LLFIDTHFDDATKKSVEEMTELVRQSFIDRLP 585


>SB_50765| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 381

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = +2

Query: 293 FLPEICRRSI*EGDQRHSKFNTTEVCWSLTLVVASPRNSVVQAPVP 430
           F  +     + E D RHS    ++ C++  L +++ +  V+  P P
Sbjct: 99  FADDCALNPVPEADMRHSINLFSDACFNFGLTISTKKTEVMHQPAP 144


>SB_26268| Best HMM Match : TIMP (HMM E-Value=2e-06)
          Length = 273

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +2

Query: 107 ACKWTPP--RPGRTQTSSVQTTGTYPFARQGKVLWCGY*SDCKRWW 238
           +C W  P  +   TQT  VQT     + R      CG   DC+RWW
Sbjct: 168 SCSWHAPWDKLTLTQTKGVQTV----YKRN-----CGCRVDCQRWW 204


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,439,491
Number of Sequences: 59808
Number of extensions: 368812
Number of successful extensions: 878
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)