Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_K22
(491 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78413-6|CAB01658.1| 144|Caenorhabditis elegans Hypothetical pr... 166 7e-42
Z78200-4|CAB01582.1| 289|Caenorhabditis elegans Hypothetical pr... 30 1.0
AF038614-7|AAB92060.2| 664|Caenorhabditis elegans Hypothetical ... 29 1.8
Z11115-14|CAC42391.1| 644|Caenorhabditis elegans Hypothetical p... 29 2.4
Z11115-13|CAA77454.2| 642|Caenorhabditis elegans Hypothetical p... 29 2.4
AF269694-1|AAF76193.1| 642|Caenorhabditis elegans LIN-9S protein. 29 2.4
AF269693-1|AAF76192.1| 644|Caenorhabditis elegans LIN-9L protein. 29 2.4
AC024090-2|AAK67219.1| 658|Caenorhabditis elegans Hypothetical ... 29 2.4
L11247-4|AAK84520.1| 392|Caenorhabditis elegans Hypothetical pr... 28 4.2
Z67995-5|CAA91945.2| 176|Caenorhabditis elegans Hypothetical pr... 27 5.6
U13071-2|AAL65793.1| 988|Caenorhabditis elegans Hypothetical pr... 27 5.6
AF016677-1|AAB66142.1| 134|Caenorhabditis elegans Hypothetical ... 27 9.8
>Z78413-6|CAB01658.1| 144|Caenorhabditis elegans Hypothetical
protein T01C3.6 protein.
Length = 144
Score = 166 bits (404), Expect = 7e-42
Identities = 70/108 (64%), Positives = 97/108 (89%)
Frame = +3
Query: 30 IQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGV 209
+Q+VQ FGRKKTATAVA+CK+G G+++VNGRPL+ +EP++L+ KLQEP+LL+GKE+F V
Sbjct: 5 VQSVQTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQDV 64
Query: 210 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILSS 353
DIR+ V GGGHVAQ+YA+RQA++KAL+A+Y KYVDE SK+E+K+I ++
Sbjct: 65 DIRIRVSGGGHVAQIYAVRQALAKALVAYYHKYVDEQSKRELKNIFAA 112
Score = 66.9 bits (156), Expect = 7e-12
Identities = 31/42 (73%), Positives = 33/42 (78%)
Frame = +1
Query: 325 RRRSKTF*VQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 450
+R K YD+SLLVADPRR E KKFGGPGARARYQKSYR
Sbjct: 103 KRELKNIFAAYDKSLLVADPRRRESKKFGGPGARARYQKSYR 144
>Z78200-4|CAB01582.1| 289|Caenorhabditis elegans Hypothetical
protein T04H1.5 protein.
Length = 289
Score = 29.9 bits (64), Expect = 1.0
Identities = 29/99 (29%), Positives = 54/99 (54%), Gaps = 6/99 (6%)
Frame = +3
Query: 204 GVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASK-KEIKDILSSIRQKFAGR* 380
GVDI+ KG GH +V A+++ ++ + A QK ++A+K +E+ D S R+ A
Sbjct: 107 GVDIKANRKGLGH--EVEAVQER-NERVEAVMQKMKEQAAKHEELIDDYSKRRKLDAN-- 161
Query: 381 PSSLRAQEIRWSRRPCQ-----IPEILPXISFQFASFGI 482
S ++IR R+ C+ I + +P +S+ + S+ +
Sbjct: 162 -SKQLVKDIRSCRKVCEELDHRIGKKVPSVSWFWRSYKV 199
>AF038614-7|AAB92060.2| 664|Caenorhabditis elegans Hypothetical
protein F15E6.9 protein.
Length = 664
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/73 (21%), Positives = 40/73 (54%)
Frame = +3
Query: 150 LQYKLQEPILLLGKEKFSGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKK 329
+Q+K ++ +++ KEK S +++R ++ +V ++ + Q + + L+ +++
Sbjct: 296 IQWKYRDAVIVQAKEKMSAIELRRAIEAKTNVI-LHDVEQKVVRYLLV-DDIHLNFCENF 353
Query: 330 EIKDILSSIRQKF 368
++K LS I Q F
Sbjct: 354 KVKITLSQILQNF 366
>Z11115-14|CAC42391.1| 644|Caenorhabditis elegans Hypothetical
protein ZK637.7b protein.
Length = 644
Score = 28.7 bits (61), Expect = 2.4
Identities = 28/99 (28%), Positives = 49/99 (49%)
Frame = +3
Query: 33 QAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVD 212
+AV+ ++ V +C +G V V+ L L++ L LQ + +G +K S VD
Sbjct: 538 EAVRQMCSQQAGRFVEHCNQGLNVENVHA--LTLIQS-LTAVLLQ--VRTMGTQKISAVD 592
Query: 213 IRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKK 329
++ G +++ IR AI +AF+Q YV+ K+
Sbjct: 593 LQSL---GDAISE---IRTAIHPRNVAFFQDYVEVHMKQ 625
>Z11115-13|CAA77454.2| 642|Caenorhabditis elegans Hypothetical
protein ZK637.7a protein.
Length = 642
Score = 28.7 bits (61), Expect = 2.4
Identities = 28/99 (28%), Positives = 49/99 (49%)
Frame = +3
Query: 33 QAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVD 212
+AV+ ++ V +C +G V V+ L L++ L LQ + +G +K S VD
Sbjct: 536 EAVRQMCSQQAGRFVEHCNQGLNVENVHA--LTLIQS-LTAVLLQ--VRTMGTQKISAVD 590
Query: 213 IRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKK 329
++ G +++ IR AI +AF+Q YV+ K+
Sbjct: 591 LQSL---GDAISE---IRTAIHPRNVAFFQDYVEVHMKQ 623
>AF269694-1|AAF76193.1| 642|Caenorhabditis elegans LIN-9S protein.
Length = 642
Score = 28.7 bits (61), Expect = 2.4
Identities = 28/99 (28%), Positives = 49/99 (49%)
Frame = +3
Query: 33 QAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVD 212
+AV+ ++ V +C +G V V+ L L++ L LQ + +G +K S VD
Sbjct: 536 EAVRQMCSQQAGRFVEHCNQGLNVENVHA--LTLIQS-LTAVLLQ--VRTMGTQKISAVD 590
Query: 213 IRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKK 329
++ G +++ IR AI +AF+Q YV+ K+
Sbjct: 591 LQSL---GDAISE---IRTAIHPRNVAFFQDYVEVHMKQ 623
>AF269693-1|AAF76192.1| 644|Caenorhabditis elegans LIN-9L protein.
Length = 644
Score = 28.7 bits (61), Expect = 2.4
Identities = 28/99 (28%), Positives = 49/99 (49%)
Frame = +3
Query: 33 QAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVD 212
+AV+ ++ V +C +G V V+ L L++ L LQ + +G +K S VD
Sbjct: 538 EAVRQMCSQQAGRFVEHCNQGLNVENVHA--LTLIQS-LTAVLLQ--VRTMGTQKISAVD 592
Query: 213 IRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKK 329
++ G +++ IR AI +AF+Q YV+ K+
Sbjct: 593 LQSL---GDAISE---IRTAIHPRNVAFFQDYVEVHMKQ 625
>AC024090-2|AAK67219.1| 658|Caenorhabditis elegans Hypothetical
protein C52E2.4 protein.
Length = 658
Score = 28.7 bits (61), Expect = 2.4
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -3
Query: 414 TTEFLGLATTRVSDQQTSVVLNLECL*SPS*MLRLHISGRKR 289
TTE +D + + L+C +PS +LRLHISG R
Sbjct: 120 TTELFACTLHLQADHVSQLRFALKCF-NPSKLLRLHISGSNR 160
>L11247-4|AAK84520.1| 392|Caenorhabditis elegans Hypothetical
protein F09G8.3 protein.
Length = 392
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 367 LLVADPRRCEPKKFGGPGARARY 435
LL DPR+ E K PGARA++
Sbjct: 365 LLTLDPRKNERSKVNQPGARAKW 387
>Z67995-5|CAA91945.2| 176|Caenorhabditis elegans Hypothetical
protein M153.3 protein.
Length = 176
Score = 27.5 bits (58), Expect = 5.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 119 SIYTQHSMSSFAVCYRSCSFLTAEN 45
S+ QHS+ +F VC ++C F + N
Sbjct: 130 SLTCQHSVFAFRVCRKTCGFCASVN 154
>U13071-2|AAL65793.1| 988|Caenorhabditis elegans Hypothetical
protein T22F7.3 protein.
Length = 988
Score = 27.5 bits (58), Expect = 5.6
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Frame = +2
Query: 161 TTGTYPFARQGKVLWCGY*SDCKRWWTCCTGLCNQTSHL*SPYRFLPEICRRSI*EGDQR 340
TTG+ +R G V C + +DC+R C G+C+ S S + + C + G+
Sbjct: 29 TTGS---SRVGDV--CNFNTDCQRGMFCGGGVCSCLSDFVS----ISQHCWPKVNPGESG 79
Query: 341 HSKFNTTEVCWSLTLVVASPRNSVVQAPVPD-TRNPTVYIIS 463
+ E W T+ ++ + VP TR+ TV I S
Sbjct: 80 CVENRQCEAVWPGTICTSAGLCECPKETVPSRTRDGTVCISS 121
>AF016677-1|AAB66142.1| 134|Caenorhabditis elegans Hypothetical
protein ZK1240.4 protein.
Length = 134
Score = 26.6 bits (56), Expect = 9.8
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = -2
Query: 487 ETIPNDAN*NDIXGRISGI-WHGRLDHRISWARNDEGQRPANFCRIELRMSLISFLDASS 311
ETI N NDI + I GR H W N RPA+ + +++ F D +
Sbjct: 62 ETIEKRKNMNDINLYTTAIELPGRWSH---WNINIARYRPADTKGMNVKLPNFKFQDENR 118
Query: 310 TYF 302
TYF
Sbjct: 119 TYF 121
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,710,777
Number of Sequences: 27780
Number of extensions: 273084
Number of successful extensions: 703
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -