Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_K22
(491 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same... 157 4e-39
At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C) 157 5e-39
At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) simi... 157 5e-39
At3g49080.1 68416.m05362 ribosomal protein S9 family protein con... 44 4e-05
At1g11480.1 68414.m01319 eukaryotic translation initiation facto... 29 1.7
At5g40090.1 68418.m04863 disease resistance protein-related cont... 28 3.9
At5g20410.1 68418.m02427 1,2-diacylglycerol 3-beta-galactosyltra... 28 3.9
At2g45640.1 68415.m05675 sin3 associated polypeptide p18 family ... 27 5.2
At5g43120.1 68418.m05264 tetratricopeptide repeat (TPR)-containi... 27 9.1
At1g13000.1 68414.m01509 expressed protein contains Pfam profile... 27 9.1
>At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same as
GB:Q42340
Length = 146
Score = 157 bits (381), Expect = 4e-39
Identities = 69/111 (62%), Positives = 94/111 (84%)
Frame = +3
Query: 15 ARREPIQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKE 194
A + ++VQ FGRKKTA AV +CKRG G++++NG P++L +P +L++K+ EPILLLGK
Sbjct: 2 ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKH 61
Query: 195 KFSGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDIL 347
+F+GV++R+ V GGGH +QVYAIRQ+I+KAL+A+YQKYVDE SKKEIKDIL
Sbjct: 62 RFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDIL 112
Score = 70.9 bits (166), Expect = 4e-13
Identities = 31/42 (73%), Positives = 36/42 (85%)
Frame = +1
Query: 325 RRRSKTF*VQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 450
++ K V+YDR+LLVADPRRCEPKKFGG GAR+RYQKSYR
Sbjct: 105 KKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146
>At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)
Length = 146
Score = 157 bits (380), Expect = 5e-39
Identities = 68/111 (61%), Positives = 94/111 (84%)
Frame = +3
Query: 15 ARREPIQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKE 194
A + ++VQ FGRKKTA AV +CKRG G++++NG P++L +P +L++K+ EP+LLLGK
Sbjct: 2 ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKH 61
Query: 195 KFSGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDIL 347
+F+GV++R+ V GGGH +QVYAIRQ+I+KAL+A+YQKYVDE SKKEIKDIL
Sbjct: 62 RFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDIL 112
Score = 70.9 bits (166), Expect = 4e-13
Identities = 31/42 (73%), Positives = 36/42 (85%)
Frame = +1
Query: 325 RRRSKTF*VQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 450
++ K V+YDR+LLVADPRRCEPKKFGG GAR+RYQKSYR
Sbjct: 105 KKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146
>At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) similar
to 40S ribosomal protein S16 GB:AAD22696 [Arabidopsis
thaliana]
Length = 146
Score = 157 bits (380), Expect = 5e-39
Identities = 67/105 (63%), Positives = 92/105 (87%)
Frame = +3
Query: 33 QAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVD 212
++VQ FGRKKTATAV YCKRG G++++NG P++L +P +L++K+ EP+LLLGK +F+GVD
Sbjct: 8 ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67
Query: 213 IRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDIL 347
+R+ GGG+ ++VYAIRQ+I+KAL+A+YQKYVDE SKKEIKDIL
Sbjct: 68 MRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDIL 112
Score = 69.7 bits (163), Expect = 1e-12
Identities = 30/42 (71%), Positives = 36/42 (85%)
Frame = +1
Query: 325 RRRSKTF*VQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 450
++ K ++YDR+LLVADPRRCE KKFGGPGARAR+QKSYR
Sbjct: 105 KKEIKDILMRYDRTLLVADPRRCESKKFGGPGARARFQKSYR 146
>At3g49080.1 68416.m05362 ribosomal protein S9 family protein
contains Pfam profile PF00380: ribosomal protein S9
Length = 430
Score = 44.4 bits (100), Expect = 4e-05
Identities = 28/79 (35%), Positives = 42/79 (53%)
Frame = +3
Query: 51 GRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVDIRVTVK 230
GR+K + A + + G G +VN + D+ P +L ++ L + DI+ TVK
Sbjct: 310 GRRKCSIARVWIQPGEGKFQVNEKEFDVYFP-MLDHRAALLRPLAETKTLGRWDIKCTVK 368
Query: 231 GGGHVAQVYAIRQAISKAL 287
GGG QV AI+ IS+AL
Sbjct: 369 GGGTTGQVGAIQLGISRAL 387
>At1g11480.1 68414.m01319 eukaryotic translation initiation
factor-related contains weak similarity to
Swiss-Prot:P23588 eukaryotic translation initiation
factor 4B (eIF-4B) [Homo sapiens]
Length = 578
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 460 NDIXGRISGIWHGRLDHRISWARNDEGQRP 371
N + G S IW+GR + +S A N+ GQ P
Sbjct: 146 NSVSGNHSNIWNGRKE--VSVANNEPGQSP 173
>At5g40090.1 68418.m04863 disease resistance protein-related
contains Pfam domain, PF00931: NB-ARC domain, a novel
signalling motif found in plant resistance gene products
Length = 385
Score = 27.9 bits (59), Expect = 3.9
Identities = 11/49 (22%), Positives = 26/49 (53%)
Frame = +3
Query: 186 GKEKFSGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKE 332
G+E++ +++ K GGH+ +V+ + +A + ++ D +KE
Sbjct: 310 GREEWVAALLKLKAKQGGHIMEVWKLMEATDDKGLEEWETAADIVERKE 358
>At5g20410.1 68418.m02427 1,2-diacylglycerol
3-beta-galactosyltransferase, putative /
monogalactosyldiacylglycerol synthase, putative / MGDG
synthase, putative identical to
monogalactosyldiacylglycerol synthase [gi:3367638] from
Arabidopsis thaliana, similar to MGDG synthase type A
[gi:9884651] from Glycine max
Length = 468
Score = 27.9 bits (59), Expect = 3.9
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +3
Query: 174 ILLLGKEKFSGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKY 308
++ +G E+ V I ++ GGGH A AIR A I F KY
Sbjct: 60 LIQIGAERTKNVLILMSDTGGGHRASAEAIRDAFK---IEFGDKY 101
>At2g45640.1 68415.m05675 sin3 associated polypeptide p18 family
protein similar to Sin3 associated polypeptide p18
(2HOR0202) (Swiss-Prot:O00422) [Homo sapiens]
Length = 152
Score = 27.5 bits (58), Expect = 5.2
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +3
Query: 189 KEKFSGVDIRVTVKGGGH-VAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILSSI 356
+EK + +RV K GGH ++ YA+R K + Y +AS +E+ D++ +
Sbjct: 35 REKTCPLLLRVFTKSGGHHTSEDYAVRGKEPKDEVQIYT--WKDASLRELTDLVKEV 89
>At5g43120.1 68418.m05264 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515: TPR Domain
Length = 588
Score = 26.6 bits (56), Expect = 9.1
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 171 PILLLGKEKFSGVDIRVTVKGGGHVAQVYAIRQAIS 278
P+L L + K S V+ RV V+ GH+A +A++
Sbjct: 139 PLLELMRRKMSWVEQRVVVRALGHLASYETTFEAVA 174
>At1g13000.1 68414.m01509 expressed protein contains Pfam profile
PF05212: Protein of unknown function (DUF707)
Length = 401
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 152 SVQTTGTYPFARQGKVLWCGY*SDCKRWWT 241
S+ + G+ A+ GK W G CKR WT
Sbjct: 349 SLPSLGSQGEAQDGKAGWQGVRDRCKREWT 378
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,027,240
Number of Sequences: 28952
Number of extensions: 253738
Number of successful extensions: 688
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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