Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_K21
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    27   1.8  
SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual     26   3.1  
SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomy...    26   4.1  

>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
 Frame = -1

Query: 208 LTEQVLPTRLPFLRRYYFNLLSSLS-FH-IDLISILISIMHIDMYRRLKL 65
           L E+ LP R   L++   NL S+L  F  IDL+ +L  ++  ++ RR+KL
Sbjct: 92  LIEEELPVR-SILKKLGINLPSALEEFEDIDLLPLLKEVLKREVARRIKL 140


>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 319 FIRDCYKRFVYTRYSAGILQFSRNKRTV 402
           FI DC +++  T +   +L+  RNK TV
Sbjct: 298 FILDCDRKYFNTEFEKRMLEERRNKGTV 325


>SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 373 LQFSRNKRTVVVNGVVIASFDCSVLN 450
           ++ S  KR ++VN     SF+C VLN
Sbjct: 166 IEASSQKRWILVNLQTSTSFECQVLN 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,043,497
Number of Sequences: 5004
Number of extensions: 39750
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)