Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_K21
         (538 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61947-2|AAB03135.1|  498|Caenorhabditis elegans Hypothetical pr...    30   0.92 
AF022983-3|AAB69942.2|  399|Caenorhabditis elegans Nuclear hormo...    29   2.8  
U80839-16|AAB37910.1|  149|Caenorhabditis elegans Hypothetical p...    28   3.7  
Z69383-1|CAA93412.1|  409|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>U61947-2|AAB03135.1|  498|Caenorhabditis elegans Hypothetical
           protein C06G3.6 protein.
          Length = 498

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -1

Query: 160 YFNLLSSLSF-HIDLISILISIMHIDMYRRLKLDDVHFTYNECRS 29
           Y N+   LSF H  L  + + +  +D+    KLDD+  T NEC++
Sbjct: 83  YNNIRPELSFYHSQLPQLFLHVRILDVSVIAKLDDLGRTVNECKA 127


>AF022983-3|AAB69942.2|  399|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 270 protein.
          Length = 399

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 198 KSSRLACPSCVGTILIY 148
           KS RL CP+C+G IL +
Sbjct: 78  KSDRLGCPACLGCILFF 94


>U80839-16|AAB37910.1|  149|Caenorhabditis elegans Hypothetical
           protein ZC204.1 protein.
          Length = 149

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = -1

Query: 502 SKQIYYYTIIN*KQFLFNLKHYN-RNWL*RHRLQRQYVYYD 383
           S Q  YY I N  Q   N K    R W   H L  QY+ +D
Sbjct: 34  SVQQGYYAIANNTQLSLNQKQMELRQWAQGHNLLNQYITFD 74


>Z69383-1|CAA93412.1|  409|Caenorhabditis elegans Hypothetical
           protein F13E9.4 protein.
          Length = 409

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -1

Query: 487 YYTIIN*KQFLFN-LKHYNRNWL*RHRLQRQYVYYD 383
           YY I+N K    N +     NW   + +Q QY+ Y+
Sbjct: 247 YYNIVNNKSLTTNQINEQASNWASANSVQAQYIQYE 282


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,954,190
Number of Sequences: 27780
Number of extensions: 212055
Number of successful extensions: 495
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)