Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_K20
         (461 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117204-13|CAB55128.1|  286|Caenorhabditis elegans Hypothetical...    28   2.8  
AF016425-6|AAY86242.1|  104|Caenorhabditis elegans Hypothetical ...    28   3.7  
Z49132-7|CAA88986.1|  403|Caenorhabditis elegans Hypothetical pr...    27   4.9  
Z69903-1|CAA93772.1|  137|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U10401-5|AAA19060.1|  238|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AF025466-2|AAB71033.1|  261|Caenorhabditis elegans Hypothetical ...    27   8.6  

>AL117204-13|CAB55128.1|  286|Caenorhabditis elegans Hypothetical
           protein Y116A8C.22 protein.
          Length = 286

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 148 CTNCQLRRHLRCYGQGTYNWKRKSQAQC 231
           CT CQ   HL+C G  +  W   SQ QC
Sbjct: 256 CTKCQKWVHLKCTGIRSKQW--NSQFQC 281


>AF016425-6|AAY86242.1|  104|Caenorhabditis elegans Hypothetical
           protein F59A7.11 protein.
          Length = 104

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +2

Query: 20  LVSVLLVGVNSRYVLVEEPGYYIEQYEDQPEQWANSRVRRQAGALTVNSDGTS 178
           L++ LL  +    V+   PG   +  ED  +     R RR  G  TV +DG++
Sbjct: 4   LINSLLFTIAILAVVWGYPGQQADHVEDLTKNRNEPRARRDLGTETVRADGSA 56


>Z49132-7|CAA88986.1|  403|Caenorhabditis elegans Hypothetical
           protein ZK666.7 protein.
          Length = 403

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +2

Query: 248 LTNQMKLGAATAGLAY--DNVNGHGATLTKTHIPGF 349
           L  +MK+  A A +AY  DNVNG    L++   PG+
Sbjct: 180 LATRMKVDVAIATVAYGQDNVNGFLRQLSQIATPGY 215


>Z69903-1|CAA93772.1|  137|Caenorhabditis elegans Hypothetical
           protein F46F2.3 protein.
          Length = 137

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 109 GAVGQLQGAPASGCTNCQLRR 171
           G +G L GAPA GC  C   R
Sbjct: 22  GGLGGLFGAPAGGCDPCAAAR 42


>U10401-5|AAA19060.1|  238|Caenorhabditis elegans Hypothetical
           protein T20B12.7 protein.
          Length = 238

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 115 VGQLQGAPASGCTNCQLRRHLRC 183
           +GQ+   P S C NC L    RC
Sbjct: 191 MGQIAAEPKSSCGNCSLGDAFRC 213


>AF025466-2|AAB71033.1|  261|Caenorhabditis elegans Hypothetical
           protein T23F4.1 protein.
          Length = 261

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 199 YNWKRKSQAQCPW 237
           Y WKRKS+++C W
Sbjct: 91  YLWKRKSRSRCEW 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,564,663
Number of Sequences: 27780
Number of extensions: 206688
Number of successful extensions: 533
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)