Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_K19
         (397 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0311 - 20120172-20122115                                         29   1.4  
01_03_0303 + 14792842-14792949,14793659-14793760,14794657-147948...    29   1.8  
02_05_0441 + 29040250-29040524,29040656-29040772,29040834-290411...    28   3.1  
01_03_0264 - 14419381-14419431,14419807-14419875,14420771-144208...    27   4.1  
01_01_0566 - 4166511-4166632,4167302-4167375,4167509-4167648,416...    27   4.1  

>05_04_0311 - 20120172-20122115
          Length = 647

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = -3

Query: 164 LSISAQAQPKLSTKPEPERTRRKISLRSSSLNI 66
           LS+S    P+L +K + ER R  + LRSSSL++
Sbjct: 529 LSVSTDYFPQLKSKCKLERLRTLLVLRSSSLSL 561


>01_03_0303 + 14792842-14792949,14793659-14793760,14794657-14794800,
            14794906-14794986,14795078-14795147,14795267-14795337,
            14795427-14795594,14796030-14796074,14796449-14796511,
            14796594-14796869,14797858-14797971,14798099-14798225,
            14798315-14798484,14798743-14798841,14799577-14799630,
            14801487-14801522,14801741-14801844,14801952-14802186,
            14802377-14802609,14802846-14803346,14803422-14803716,
            14805796-14805881,14806952-14807064,14807303-14807385,
            14808014-14808866,14809215-14809364,14809963-14811146
          Length = 1854

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = -3

Query: 161  SISAQAQPKLSTKPEPERTRRKISLRSSSLNIVNFNKRNIELRF 30
            ++ + A+P    K  P++T  +  LR   L ++N  K++I+LRF
Sbjct: 1079 TLPSSAKPATKQKVAPKKTDVRAILRP--LTVINCQKKDIQLRF 1120


>02_05_0441 +
           29040250-29040524,29040656-29040772,29040834-29041143,
           29041863-29042018,29042332-29042483,29042783-29042936,
           29043897-29043998,29044168-29044209
          Length = 435

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 231 IAGPALIMPFLMLRPIFSIFLKTFHFGS 148
           I GPA++  ++ L+P+ S  L  F  GS
Sbjct: 304 ILGPAMVSLYMPLQPVVSALLSKFFLGS 331


>01_03_0264 -
           14419381-14419431,14419807-14419875,14420771-14420817,
           14421340-14422474
          Length = 433

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 213 IMPFLMLRPIFSIFLKTFHFGSGAAETVDKA 121
           I P L LRP  +IFL    F SG  +T+ ++
Sbjct: 202 IPPELFLRPYDAIFLNNNRFTSGIPDTIGRS 232


>01_01_0566 -
           4166511-4166632,4167302-4167375,4167509-4167648,
           4167731-4167802,4167915-4167984,4168112-4168185,
           4168316-4168487,4168887-4168976,4169151-4169175,
           4169273-4169432,4169855-4170265,4170443-4170559
          Length = 508

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 213 IMPFLMLRPIFSIFLKTFHFGSGA 142
           ++PF +  P+  ++ K  HFG+GA
Sbjct: 216 VVPFFLPSPLIQLYGKIAHFGAGA 239


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,176,653
Number of Sequences: 37544
Number of extensions: 113110
Number of successful extensions: 317
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)