Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_K19
         (397 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132862-23|CAB60559.1|  540|Caenorhabditis elegans Hypothetical...    29   1.2  
U55375-4|AAC69042.3|  287|Caenorhabditis elegans Lim domain fami...    26   8.5  
AF016414-4|AAG24021.2|  230|Caenorhabditis elegans Serpentine re...    26   8.5  
AF016414-3|AAW88405.1|  329|Caenorhabditis elegans Serpentine re...    26   8.5  
AC006808-1|AAF60813.1|  486|Caenorhabditis elegans Hypothetical ...    26   8.5  

>AL132862-23|CAB60559.1|  540|Caenorhabditis elegans Hypothetical
           protein Y73F8A.30 protein.
          Length = 540

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = -3

Query: 188 PFFQFS*RLSISAQAQPK--LSTKPEPERTRRKISLRSSSLNIVNFNKRNIELRFIC 24
           P+ Q + +L+IS+    K  ++ +PE E       L +    +V+FN + +E +F+C
Sbjct: 140 PYDQQACKLTISSWTSSKSDINYEPEHESVNMDNFLPNEEWVVVSFNIKRVEEKFVC 196


>U55375-4|AAC69042.3|  287|Caenorhabditis elegans Lim domain family
           protein 6 protein.
          Length = 287

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +3

Query: 129 RQFRLRLSRNGKSSRKLKKWVATSETALS 215
           RQF+    R+ K SRK+++ +A +ET LS
Sbjct: 176 RQFKTAFERSSKPSRKVREQLA-NETGLS 203


>AF016414-4|AAG24021.2|  230|Caenorhabditis elegans Serpentine
           receptor, class h protein210, isoform a protein.
          Length = 230

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -2

Query: 261 PSALASPKTAIAGPALIMPFLMLRPIFS--IFLKT 163
           P  L +P  A+AGPA++     LR  +S  IF+ T
Sbjct: 154 PFTLTTPDQAVAGPAILQRLPTLRCFYSDDIFVLT 188


>AF016414-3|AAW88405.1|  329|Caenorhabditis elegans Serpentine
           receptor, class h protein210, isoform b protein.
          Length = 329

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -2

Query: 261 PSALASPKTAIAGPALIMPFLMLRPIFS--IFLKT 163
           P  L +P  A+AGPA++     LR  +S  IF+ T
Sbjct: 154 PFTLTTPDQAVAGPAILQRLPTLRCFYSDDIFVLT 188


>AC006808-1|AAF60813.1|  486|Caenorhabditis elegans Hypothetical
           protein Y58G8A.1 protein.
          Length = 486

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 201 LMLRPIFSIFLKTFHFGSGAAETVDKARTRANTKKNILEK 82
           ++LR I    L  FHFG+ A+++ D+ +  A   K    K
Sbjct: 2   ILLRLISIGVLINFHFGNAASQSTDERKLEAQLLKGYNSK 41


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,561,275
Number of Sequences: 27780
Number of extensions: 107273
Number of successful extensions: 320
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)