Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_K19
         (397 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14096.1 68417.m02176 F-box family protein contains F-box dom...    28   2.6  
At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEME...    27   3.4  
At3g47580.1 68416.m05180 leucine-rich repeat transmembrane prote...    26   7.9  

>At4g14096.1 68417.m02176 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 468

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 18/80 (22%), Positives = 36/80 (45%)
 Frame = -2

Query: 309 SQKGLHYFKLKLQLIYPSALASPKTAIAGPALIMPFLMLRPIFSIFLKTFHFGSGAAETV 130
           S   LH + ++ + ++PS +   KT +    ++ P L    ++   LKT +  S   E  
Sbjct: 115 SDLDLHVY-METEFVFPSEMFLSKTLVRLKLMLYPLLEFEDVYLPKLKTLYIDSCYFEKY 173

Query: 129 DKARTRANTKKNILEKFIVE 70
               T+  +   ILE  +++
Sbjct: 174 GIGLTKLLSGCPILEDLVLD 193


>At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEMETER
           protein [Arabidopsis thaliana] GI:21743571; contains
           Pfam profile PF00730: HhH-GPD superfamily base excision
           DNA repair protein
          Length = 1729

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -3

Query: 164 LSISAQAQPKLSTKPEPERTRRKISLRSSSLNIVNFNK 51
           +S++A+  PKLS+  E ER  R + +      I+N N+
Sbjct: 789 MSLAARFPPKLSSSREDERNVRSVVVEDPEGCILNLNE 826


>At3g47580.1 68416.m05180 leucine-rich repeat transmembrane protein
           kinase, putative protein kinase Xa21 - Oryza sativa,
           PIR:A57676
          Length = 1011

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +1

Query: 1   RLPRVWCLHINLNSIFRLLKLTIFNDELLKDIFLRVRSGSGFVDS 135
           RL ++  L +++N  F +    I+N   L+D+FL    GSGF  S
Sbjct: 208 RLSQMVGLGLSMNKFFGVFPPAIYNLSALEDLFL---FGSGFSGS 249


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,086,258
Number of Sequences: 28952
Number of extensions: 98036
Number of successful extensions: 325
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 565902384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)