Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_K18
         (333 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb...    24   7.0  
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce...    24   7.0  

>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 910

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -3

Query: 205 MVQYPPLLYPFCLQL 161
           MVQY P LYP+ L L
Sbjct: 449 MVQYLPELYPYFLSL 463


>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 80  FIFLFTMYCSEDG 42
           F+ +FT YC  DG
Sbjct: 455 FVIIFTSYCDSDG 467


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,398,834
Number of Sequences: 5004
Number of extensions: 28069
Number of successful extensions: 54
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)