Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_K18
(333 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35686| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-32) 28 2.2
SB_12488| Best HMM Match : PAN (HMM E-Value=0.0087) 28 2.2
SB_43765| Best HMM Match : Ataxin-2_N (HMM E-Value=6.6) 27 2.9
SB_31989| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.8
SB_30657| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.8
SB_7781| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.8
SB_23012| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.8
SB_15772| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.8
SB_39360| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_254| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-05) 26 6.6
SB_54631| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.8
>SB_35686| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-32)
Length = 340
Score = 27.9 bits (59), Expect = 2.2
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +1
Query: 124 LHSRDV-CFTSALLAADKRDTKAVGTAPSMDANVCDNFIVHLKF 252
LHSRD+ CFT+A + A+ RD V ++ VC FI ++ F
Sbjct: 211 LHSRDISCFTTARIKAN-RDVLRVVFVITILFIVCWGFIYNIYF 253
>SB_12488| Best HMM Match : PAN (HMM E-Value=0.0087)
Length = 124
Score = 27.9 bits (59), Expect = 2.2
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +3
Query: 147 YECIASCRQKGYKSGGYCTINGCQCL 224
Y+C + +G SGG C +N C+ +
Sbjct: 72 YKCNSGMESEGMDSGGTCELNHCEAV 97
>SB_43765| Best HMM Match : Ataxin-2_N (HMM E-Value=6.6)
Length = 282
Score = 27.5 bits (58), Expect = 2.9
Identities = 19/66 (28%), Positives = 32/66 (48%)
Frame = -2
Query: 206 DGAVPTAFVSLLSAASNALVKHTSREWRIYVYRVPFDQSARRFIFLFTMYCSEDGHKKNS 27
DG+ S+++ A N +VK W+ V+ VP+ + R FI T + + D + +
Sbjct: 212 DGSAIVTPTSVVTDAYNEIVK-----WKKNVFLVPYGKIGREFIDQVTSHIN-DWNAGSE 265
Query: 26 EHQTSL 9
H SL
Sbjct: 266 NHHVSL 271
>SB_31989| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1498
Score = 27.1 bits (57), Expect = 3.8
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +1
Query: 19 WCSLFFL*PSSLQYMVKRKMNLLALWSKGTRYT*ILHSRDVCFTSALLA--ADKRDTKAV 192
+ S FF+ P+ + + K++L L T + +L F + A AD++D + V
Sbjct: 410 FASDFFVPPNKIDWS---KISLDELAKNPTVFAFVLSIFGAYFLLVIWARRADRKDLEKV 466
Query: 193 GTAPSMDANVCDNFIVHL 246
G AP D + DN++ +
Sbjct: 467 GLAPLPDNDPRDNYLYEI 484
>SB_30657| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 108
Score = 27.1 bits (57), Expect = 3.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 123 PPFPRCVFYECIASCRQKGYK 185
P + C+FYEC+ RQ G++
Sbjct: 18 PTWEMCLFYECLWCFRQTGHR 38
>SB_7781| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 447
Score = 27.1 bits (57), Expect = 3.8
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +3
Query: 36 LMTVFAAVHGEEENESSR--TLVKRDTIYVDPPFPRCVFY 149
L T++A+ H S+R T+ R T+ V PP P C Y
Sbjct: 198 LYTLYASNHRTRYIHSTRPTTVPVRCTLRVQPPCPLCTLY 237
>SB_23012| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 27.1 bits (57), Expect = 3.8
Identities = 17/45 (37%), Positives = 28/45 (62%)
Frame = +1
Query: 145 FTSALLAADKRDTKAVGTAPSMDANVCDNFIVHLKF*YKPTFLYN 279
FT L++A+ TKA GT P ++ + D +H+KF + TFL++
Sbjct: 4 FTDTLISANI-GTKA-GTGPPLEVDGIDKLDLHVKF-QEYTFLHS 45
>SB_15772| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 27.1 bits (57), Expect = 3.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 123 PPFPRCVFYECIASCRQKGYK 185
P + C+FY C+ RQKG++
Sbjct: 40 PTWEMCLFYACLWCFRQKGHR 60
>SB_39360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 209
Score = 26.6 bits (56), Expect = 5.0
Identities = 19/54 (35%), Positives = 23/54 (42%)
Frame = +1
Query: 130 SRDVCFTSALLAADKRDTKAVGTAPSMDANVCDNFIVHLKF*YKPTFLYNIFFL 291
S C+T L T V + D +V FIV L + PT L N FFL
Sbjct: 85 SNYTCYTDDL----NNPTLVVSKRNTRDIHVMAVFIVSLILFFVPTILLNAFFL 134
>SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 26.6 bits (56), Expect = 5.0
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +3
Query: 6 MKACLVFAIFLMTVFAAVHGEEENESSR 89
MK C+ F +F + + + EE+N+ S+
Sbjct: 1 MKLCVFFLVFCLVLITVLATEEDNKESK 28
>SB_254| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-05)
Length = 276
Score = 26.2 bits (55), Expect = 6.6
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 3 TMKACLVFAIFLMTVFAAV 59
T+ C++ A+FL+T F AV
Sbjct: 161 TIAVCIILAVFLLTFFPAV 179
>SB_54631| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 123
Score = 25.8 bits (54), Expect = 8.8
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -2
Query: 182 VSLLSAASNALVK-HTSREWRIYVYRVPFDQSARRFI 75
+S S N+L++ +RE R YV+ V DQS R++
Sbjct: 58 ISASSGCLNSLLRDQENREHRKYVWNVCSDQSLARYL 94
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,447,125
Number of Sequences: 59808
Number of extensions: 208760
Number of successful extensions: 639
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 475580678
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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